Sodalis glossinidius: SG2388
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Entry
SG2388 CDS
T00316
Name
(GenBank) ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sgl
Sodalis glossinidius
Pathway
sgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG2388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgl03019
]
SG2388
Enzymes [BR:
sgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SG2388
Messenger RNA biogenesis [BR:
sgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SG2388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAE75663
UniProt:
Q2NQB2
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All DBs
Position
4093442..4094689
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AA seq
415 aa
AA seq
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MSKTHLTEKKFSDFALYPPIVEVLDSKGFNNCTPIQALTLPTTLAGKDVAGQAQTGTGKT
LAFLTATFHHLLTHPAAEGRQTNQPRALIMAPTRELAVQIHSDAEPLAQATGLKMGLAYG
GDGYDKQLKVLEAGVDILVGTTGRLIDYTKQNYVNMSAIQVVVLDEADRMFDLGFIKDIR
WLFRRMPAAAGRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPLQKTGHRIQEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVSQKRRLRILE
KFTQGALDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGCSISLA
CEEYALNLTAIESYIGHQIPVSKYNSDALLTDLPAPKRLTRRRSGAPRHNRKRPG
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaacagaaaagaagttttccgacttcgccctgtacccgccaatc
gttgaagtgcttgattctaaaggctttaacaattgtacacccattcaagcgctgactttg
cccactacgcttgcaggcaaagacgtcgcgggccaggcgcaaaccggtaccggcaaaacg
ctggccttcttaacggccacgtttcatcatctactcacccaccctgccgccgagggacgt
caaaccaatcagccacgcgcgctgatcatggcgcccacccgcgagctggcggtgcaaatc
cattccgatgctgaaccattagcccaggcgaccggcctgaaaatggggttggcctacggc
ggcgatggttatgataagcagttgaaagtgctggaagccggggtcgatatcctggtgggc
acgaccggcaggctgattgattataccaaacaaaactacgtcaatatgagcgccatacag
gtagtggtgctggacgaagccgacaggatgttcgacctcggtttcatcaaggatatccgt
tggctgttccgccggatgcccgccgccgccggacggctgaatatgctgttctccgccacg
ctctcctatcgggtgcgtgagctggccttcgagcatatgaataacgccgaatatgtcgaa
gtggaaccgctgcaaaaaacgggtcaccgcatacaagaagaactgttttacccctccaac
gaagaaaaaatgcggcttctgcaaacgctgatcgaggaagaatggcccgaccggtgtata
attttcgccaataccaagcaccgctgtgaagatatctggggccatctggccgctgacggt
catcgcgtcggactgctgaccggcgatgtttcgcagaaacggcgcctgcgcattttggag
aagtttacccagggcgcgctggatatactggtggcgacggacgtggccgcccgcggactg
catattccttccgtgacccatgtattcaactacgatttacccgacgactgcgaagattat
gtgcaccgcatcggccgcaccggacgcgccggcgagagcggttgctccatcagcctggcg
tgcgaagaatatgcgttgaatcttaccgcaattgaaagctatattggccatcagatcccc
gtcagtaaatataacagcgacgcgctgctgaccgacctgcccgcgccaaaacggttgacc
cgccgccgcagcggcgcaccgcgccataaccgtaaacgtccgggctga
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