KEGG   Streptomyces griseochromogenes: AVL59_31480Help
Entry
AVL59_31480       CDS       T04729                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sgs  Streptomyces griseochromogenes
Pathway
sgs03030  DNA replication
sgs03410  Base excision repair
sgs03420  Nucleotide excision repair
sgs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sgs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AVL59_31480 (ligB)
   03410 Base excision repair
    AVL59_31480 (ligB)
   03420 Nucleotide excision repair
    AVL59_31480 (ligB)
   03430 Mismatch repair
    AVL59_31480 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sgs03032]
    AVL59_31480 (ligB)
   03400 DNA repair and recombination proteins [BR:sgs03400]
    AVL59_31480 (ligB)
Enzymes [BR:sgs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AVL59_31480 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     AVL59_31480 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AVL59_31480 (ligB)
DNA replication proteins [BR:sgs03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AVL59_31480 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AVL59_31480 (ligB)
DNA repair and recombination proteins [BR:sgs03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AVL59_31480 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     AVL59_31480 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     AVL59_31480 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ANP53456
UniProt: A0A1B1B3Q3
LinkDB All DBs
Position
7338075..7339613
Genome map
AA seq 512 aa AA seqDB search
MLLTRLAEVSRQVAATAARSRKTALLAELFRDAEADDVPIVIPYLAGRLPQGRLGVGWKV
LSRPVPPAAEPSLTVREVDARLGELGKVSGPGAQAERARIVGELMGAATEEEQRFLLGLL
TGEVRQGALDAVAVEGLARARGADPADVRRAVMLAGSLQTVAQALLAEGPEALERFRLTV
GRPVLPMLARSASSVAEAVGKLGSCAVEEKLDGIRVQVHRDGDAVRIHTRTLDDITDRLP
EVTTAALELAGERFILDGEVISFDPAGRPRSFQETAGRVGSRTDVAKAAEEVPVSPVFFD
ALSVDGRDLLDLPFDERHAELARLVPEPMRVRRTVVTGPREVTEAERFLADTLARGHEGV
VVKALDAPYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGRLSNLHLGARDPDGTFA
MLGKTFKGMTDAMLAWQTGKLRELAVEDNGRVVTVRPELVVEIAYDGLQRSSRYPAGVTL
RFARVVRYREDKRPEEADTVESLLAAHPEVMP
NT seq 1539 nt NT seq  +upstreamnt  +downstreamnt
atgctgctgacccggctcgcggaggtgtcccgtcaggtcgccgcgacggcggcccggtcc
cgcaagaccgcgctgctcgcggagctgttccgggacgcggaggcggacgacgtgccgatc
gtcatcccctacctggccggacggctcccgcaggggcggctcggcgtcggctggaaggtg
ctgagccgcccggtcccgccggccgccgagccctccctgaccgtgcgggaggtcgacgcc
cggctcggcgagctgggcaaggtgtccgggcccggggcccaggcggaacgggcccggatc
gtgggcgagctgatgggcgcggccaccgaggaggagcagcgcttcctgctcggcctgctc
accggcgaggtccggcagggcgcgctggacgcggtcgccgtggagggcctcgcccgggcg
aggggcgcggacccggcggacgtacggcgggcggtgatgctcgccgggtcgctgcagacg
gtggcccaggccctgctcgccgaggggccggaggcgctggagcggttccggctgaccgtc
ggccggccggtgctgccgatgctggcgcggagcgcctcctcggtcgccgaggcggtcggc
aagctgggctcgtgcgcagtggaggagaagctggacggcatccgggtccaggtccaccgg
gacggcgacgcggtacgcatccacacccgcaccctggacgacatcaccgaccggcttccc
gaagtgaccaccgccgcactggagttggcgggtgagcggttcatcctggacggcgaggtg
atctccttcgacccggcgggccgcccccgctccttccaggagacggcaggccgggtcggc
tcccgcacggacgtggcgaaggccgccgaggaggtcccggtctcccccgtcttcttcgac
gccctgtcggtcgacggccgcgacctgctcgacctgcccttcgacgagcggcacgcggag
ctggcccgtctggtgccggagccgatgcgggtgcgccggacggtggtgaccggcccccgg
gaggtcaccgaggcggaacggttcctcgccgacaccctggcccgcggccacgagggcgtg
gtcgtcaaggcgctggacgccccctacagcgcgggccggcgcggcgcctcgtggctgaag
gtcaagcccgtgcacaccctggacctcgtggtgctggccgcggagtggggccacggccgt
cgcaccggcaggctctccaacctccacctgggcgcccgcgatcccgacgggacgttcgcg
atgctcggcaagaccttcaagggcatgaccgacgcgatgctcgcctggcagaccgggaag
cttcgggaactggccgtcgaggacaacggccgggtggtcaccgtacgccccgaactcgtc
gtggagatcgcctacgacggtctgcagcgctcctcccgctacccggccggcgtcaccctg
cgcttcgcgcgcgtcgtccgctaccgcgaggacaagcggcccgaggaggccgatacggtg
gagtccctgctggcggcccatccggaggtcatgccgtga

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