Syntrophobotulus glycolicus: Sgly_2232
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Entry
Sgly_2232 CDS
T01429
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sgy
Syntrophobotulus glycolicus
Pathway
sgy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sgly_2232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgy03019
]
Sgly_2232
Messenger RNA biogenesis [BR:
sgy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sgly_2232
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Regulator_TrmB
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
ADY56521
UniProt:
F0STZ8
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Position
complement(2271066..2272730)
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AA seq
554 aa
AA seq
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MPKEHKLQIIPLGGLGEVGKNMTVIRYGNQMILIDAGLAFPEDDMFGIDIVIPDYSYIID
NRDQLLGVFVTHGHEDHIGTLPYLLRDVDTHIYATTLTLGLIHAKLKENSINKFQATAVK
PGESIRLGHFKIEFIRVSHSIPDSVGLAIHTPLGTIVHTGDFKLDHTPVSGDILDIHKFS
ELGQKGVLCLMSDSTNVERPGFTQSESKVGQMFDEVFRAAKERIILASFASNVHRVQQVI
AAAVKTDRKVAIVGRSMLNYATIAAELGYLKIPEGTMVDVDEILNLPSNRICIVTTGSQG
EPMSALTRIAMNDHKKIEIQPGDTVIISATPIPGNEKSVAKTVDLLFRQGANVIHESASG
VHVSGHASREELKLMLNMVKPRYFVPVHGEYRMLIKHGQLAEQLGIPEENIFIAENGSII
EFTKNSACIAGKVTSGRILVDGLGVGDVGNIVLRDRKQLSQEGILIVVMTLSRSSGRIVA
GPDVVTRGFVYVRESESMLDEAKAKIRQTTERCLVSGNIEWALLKNQIRDVLGKHFYEKT
RRRPVILPIIQEVP
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgcctaaagaacacaaactgcaaattattcctctcggcggacttggtgaagttgggaaa
aacatgacggtcatccgttatgggaaccaaatgattctgattgatgcaggattagcattt
ccggaagatgacatgttcgggatcgatatcgtgattcccgactattcatatattattgat
aaccgagatcaattactgggggtttttgtcactcacggtcatgaagaccatatcggaacc
ctgccctatctgttaagagatgttgatacgcatatttatgccacaactttaaccttaggg
ctcatccatgccaaacttaaggaaaacagcattaacaaatttcaggcaactgcggtaaag
cctggagaaagcattaggctggggcattttaaaattgaatttatcagggtcagccacagt
atacctgattccgtgggactggcgatccatactccattagggacaatcgttcataccggg
gattttaagctcgatcatacccctgtttccggggatatcctggatatccataagttttcc
gagcttggtcaaaagggtgtcctttgtctgatgtcggacagtacgaatgtagaaagaccg
ggatttacgcaatcggagagcaaagtagggcagatgtttgatgaagtttttcgggcagcc
aaggaaagaattatcctggccagctttgcttctaatgtccaccgggttcagcaagtcatt
gccgcggcagtgaaaacagaccgcaaggtagcgattgtaggcagaagtatgctgaattat
gcgacgatagcggctgaacttggttatttaaagattccggaaggcacgatggtcgatgtt
gacgaaatcttaaaccttccaagcaatcgaatatgtattgtcacaacaggcagtcagggt
gagccgatgtctgctctgaccagaattgccatgaatgatcataagaagatcgagattcag
ccaggagacaccgtaatcatttcggcgaccccaattccgggcaatgaaaaatctgtggcg
aaaaccgttgatttactgtttagacagggagccaatgtcattcatgagtctgcttcagga
gtacatgtatcaggccatgccagtcgggaagaattaaagctgatgctgaatatggtgaag
cctcgatactttgtgccggttcatggggaatacaggatgttgatcaagcacgggcagctg
gcggagcagcttgggattcccgaggaaaatatttttattgccgaaaacggcagtatcatc
gaattcaccaaaaacagcgcctgtattgccggcaaggtcacatcgggcagaatactggtt
gacggcctgggcgtaggagatgtaggcaatattgtgctcagggacagaaagcagctttcc
caggaaggaatattaatcgtcgtgatgacgttaagccgttcctcaggacggattgtggcc
ggaccagatgttgtcaccagaggttttgtttatgtccgggagtcggaaagcatgttggat
gaggcgaaagctaaaatcagacagacgacagagcgttgtttagtcagcggcaatatagaa
tgggcgttgctcaagaatcaaatcagagacgtactcggcaaacacttttatgaaaagacc
cgccgcagaccggttattcttcccattatccaggaagtaccgtaa
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