KEGG   Sulfuritalea hydrogenivorans: SUTH_03391Help
Entry
SUTH_03391        CDS       T03591                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
shd  Sulfuritalea hydrogenivorans
Pathway
shd03030  DNA replication
shd03410  Base excision repair
shd03420  Nucleotide excision repair
shd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:shd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SUTH_03391
   03410 Base excision repair
    SUTH_03391
   03420 Nucleotide excision repair
    SUTH_03391
   03430 Mismatch repair
    SUTH_03391
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shd03032]
    SUTH_03391
   03400 DNA repair and recombination proteins [BR:shd03400]
    SUTH_03391
Enzymes [BR:shd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SUTH_03391
    6.5.1.6  DNA ligase (ATP or NAD+)
     SUTH_03391
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SUTH_03391
DNA replication proteins [BR:shd03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SUTH_03391
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SUTH_03391
DNA repair and recombination proteins [BR:shd03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SUTH_03391
   NER (nucleotide excision repair)
    Other NER factors
     SUTH_03391
   MMR (mismatch exicision repair)
    Other MMR factors
     SUTH_03391
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: BAO31161
UniProt: W0SK07
LinkDB All DBs
Position
complement(3550428..3551189)
Genome map
AA seq 253 aa AA seqDB search
MLLAERYRGDIDVSRYWASEKLDGVRAVWDGKVLRFRSGNPVPAPKWFIDALPRQPLDGE
LWLGRGSFDQLSAIVRRQGPVDAEWQRVRYMIFELPNAPGSFTERVEQIKAVIVAANLPW
LQAVPQFRLPDAAALQKRLRDIVRSGGEGLMLHRDDAAYETGRSSALLKLTPWLDAEAIV
VAHLPGKGKYAGMLGALQMELPDGRHFALGSGLTDAQRRNPPSVGTQITYRYRELTKNGM
PRFPRYLRVRDKL
NT seq 762 nt NT seq  +upstreamnt  +downstreamnt
ttgctcctggccgaacgctatcgcggcgacatcgacgtatcccgctactgggccagcgaa
aaactcgacggagtgcgtgccgtatgggacggcaaggttctgcgctttcgcagcggcaac
ccggtacccgccccgaagtggtttatcgacgccttgccccggcagccactggatggcgaa
ctttggctcggacgcggcagctttgatcaactctcggccattgtccggcgccaggggccc
gtggatgccgaatggcaacgcgtgcgctacatgatcttcgaattgcccaatgcccccggc
agctttaccgaacgcgtggaacagatcaaggccgtcatcgtcgcggcgaatcttccctgg
ctgcaagccgttccccaattccggctacccgatgcggcggcgctgcagaaaaggctgcgc
gacattgtccgtagcggcggcgaaggactcatgcttcaccgcgacgatgccgcctacgaa
accggtcgctccagtgccttgctcaaactaactccatggctcgacgccgaagccatcgtt
gtcgcccatctgcctggcaagggaaaatatgccggcatgcttggcgcattgcagatggag
ttgcccgacggtcgccacttcgccctgggcagcggtcttaccgatgcccagcgccgcaat
ccgccgtcggtaggcacgcagatcacctaccgttatcgcgagctgacgaagaacggcatg
ccgcgcttcccgaggtatctgcgggtgcgtgataagctttga

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