KEGG   Shewanella sp. MR-4: Shewmr4_2191Help
Entry
Shewmr4_2191      CDS       T00388                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
she  Shewanella sp. MR-4
Pathway
she03030  DNA replication
she03410  Base excision repair
she03420  Nucleotide excision repair
she03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:she00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Shewmr4_2191
   03410 Base excision repair
    Shewmr4_2191
   03420 Nucleotide excision repair
    Shewmr4_2191
   03430 Mismatch repair
    Shewmr4_2191
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:she03032]
    Shewmr4_2191
   03400 DNA repair and recombination proteins [BR:she03400]
    Shewmr4_2191
Enzymes [BR:she01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Shewmr4_2191
    6.5.1.6  DNA ligase (ATP or NAD+)
     Shewmr4_2191
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Shewmr4_2191
DNA replication proteins [BR:she03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Shewmr4_2191
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Shewmr4_2191
DNA repair and recombination proteins [BR:she03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Shewmr4_2191
   NER (nucleotide excision repair)
    Other NER factors
     Shewmr4_2191
   MMR (mismatch exicision repair)
    Other MMR factors
     Shewmr4_2191
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M DNA_ligase_aden RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ABI39264
LinkDB All DBs
Position
complement(2618901..2619809)
Genome map
AA seq 302 aa AA seqDB search
MALTTRSQFLTSTLVRCLVFFYGIFGLLMAVSYANPQAPKIQLATEYSRENSAHISDFLV
SEKLDGVRGYWDGKRLVTRQGNPILAPSWFTADFPTTPMDGELWLGRGQFEAISGIIRQM
SPKESDWQNVRFMVFDLPEAQGSFETRYQQMQTLLAGKSIYLQVIEQVRVESIEALYQKL
DALVAQGAEGLILHRRSALYTPGRNPNVMKLKPYLDAEAKVIGHIAGKGQFAGQMGALRV
QTPDGRVFSIGTGFTLAERQHPPAIGTLITYKYLGLTVNGLPRFASYLRIRADMPAEDKD
KE
NT seq 909 nt NT seq  +upstreamnt  +downstreamnt
atggctcttacaactcgctcacagtttttaacatccacgctcgtgcggtgtttagtgttt
ttctacggtattttcggcttattgatggccgtgagttacgccaatccccaagcgcccaag
atccaattagcgaccgaatattcaagggaaaatagtgcccacatcagtgattttctcgtc
agcgaaaaactcgatggtgtgcgcggttattgggatggaaaacgtttagtgactcgtcag
ggcaatccaatcttagcgccaagttggtttactgcggactttccaaccaccccaatggac
ggtgagttatggcttgggcgagggcagtttgaggcgatatctgggattattcgccaaatg
tcgccgaaggagagcgactggcagaacgtacgctttatggtatttgatttacccgaggcg
caagggagctttgaaacgcgctatcaacagatgcagactctgcttgcaggtaaatcgatt
tatcttcaagtcattgagcaggtgagggtagagagtatcgaggcgctttatcaaaagttg
gatgccttggtagctcagggcgccgaaggtttaattctgcataggcgctcagccttgtat
acaccagggcgaaatcctaatgtgatgaagttaaagccttatttggatgccgaagccaag
gtgattgggcatatagcgggtaaagggcagtttgctgggcagatgggggcattaagagtg
caaacaccggatggccgtgtctttagtattggcacaggttttacccttgccgagcgtcag
catccacccgccattggcacgcttatcacctacaaatatcttggattaaccgtcaatggc
ctcccgcgctttgccagttatttgcgaataagagcagatatgccagctgaagacaaagat
aaagaataa

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