Shewanella halifaxensis: Shal_0862
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Entry
Shal_0862 CDS
T00654
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
shl
Shewanella halifaxensis
Pathway
shl03410
Base excision repair
shl03430
Mismatch repair
shl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Shal_0862
03430 Mismatch repair
Shal_0862
03440 Homologous recombination
Shal_0862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shl03400
]
Shal_0862
DNA repair and recombination proteins [BR:
shl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Shal_0862
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Shal_0862
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Shal_0862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ABZ75437
UniProt:
B0TUD7
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All DBs
Position
1074563..1076287
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AA seq
574 aa
AA seq
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MIHKIVRRLRVDDSHLPDTFSPILKQIYASRGLSASDCELSLAKLLRPDTMAGLEQAAKI
IADGIAAQKAILIMGDFDADGATSTSVCILALRMMGAQKVDYLIPNRFDYGYGLSPEIVA
VAASKQAELLITVDNGISSIEGVAAAKACGMTVVITDHHLPGHTLPDADAIVNPNQDGCG
FASKSIAGVGVAFYLMSALRAELRSRNWYLEQGISEPNLAQLLDIVALGTVADVVSLDTN
NRILVEAGLQRVKAGRCRVGITALLEVAKRTPSRIVASDFGFAVGPRLNAAGRLDEMALG
VETLLCDDIMLARRMASELDGLNAERRDLEADMQQEALKSLESIELNEAELPWGIAIYQA
DWHQGVIGILASRIKDKYHRPVIAFAEAGDGEIKGSARSIKGLHMRDLLELINTRHPGLI
LKFGGHAMAAGLSIQAGQFALFADAYDKAVREVLAPELLTGELVSDGELVPEQFKLELAS
ELRSAGPWGQSFPEPLFDGYFRVIQQRIVGEKHLKLILETECGRVMLDAIAFNVDLKTWP
DATIQYAQVVYKLDVNEFRGNQSLQLMVEQIEPK
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgatccataagatagttcgccgcctcagagtggatgatagtcaccttcccgatacgttt
tcgccaatcttaaaacagatctatgccagccgcggcttgagtgcgtctgactgcgagtta
agcttagctaaattacttaggcccgataccatggccgggctagaacaagccgccaaaatc
attgccgacggcatagcggcgcaaaaagcgattctgatcatgggtgacttcgatgccgat
ggcgcaacctcaactagcgtgtgcatactcgcgcttagaatgatgggcgcgcagaaggtg
gattacctgatcccaaaccgttttgactatggctacggcttaagccctgagattgtcgct
gtcgctgcgagtaagcaggccgagctactgatcacagtcgataatggcatttcctccata
gaaggagttgccgccgcaaaagcttgtggaatgacagtggttatcaccgatcaccatctt
ccgggtcacaccctgcctgatgccgatgctatcgtgaacccaaaccaagatggctgtggc
tttgccagtaagtctatcgctggtgttggcgtggctttttacttgatgtcggcgctgaga
gccgagcttagaagccgtaactggtatctagagcagggcattagtgagcccaatcttgca
cagctactggatattgtagcccttggtaccgttgccgatgtggtatcgctcgacaccaat
aaccgtatcttagtggaagcgggtctacagcgagttaaagcgggacgttgccgtgtgggg
atcaccgctttactggaagtggctaaacgtactccttcacgtattgtcgcatcagacttt
ggcttcgccgttggcccaagacttaacgccgcaggccgtctcgatgagatggcgttaggc
gtcgaaaccttgctgtgtgacgatatcatgctggctcgtcgcatggcatctgaactcgat
ggcctcaatgccgagcgccgtgatttagaagccgatatgcagcaagaggcgcttaagagc
cttgagagtatcgagcttaacgaagcggagttgccatggggcattgccatttatcaagcc
gattggcaccaaggcgtgataggtatcttggcctctcgcattaaagacaagtatcaccgc
ccagtaatcgcctttgccgaagcgggtgacggcgagataaaaggctcggcgcgctcgatt
aagggcttgcatatgcgtgacctgctcgagctgattaatacccgccacccggggcttatc
ctaaagttcggtggtcacgctatggccgcaggcttatcgattcaagcgggtcagtttgcc
ctgtttgccgatgcctacgacaaggccgtacgggaagtattagcgcctgagttgttaact
ggcgagctggtctcagacggcgagctggtgcctgagcagtttaaacttgagcttgctagt
gagctaagatctgctggcccgtggggccagtcattcccggagccgctgtttgatggctat
tttagggttattcagcagcgcattgttggcgagaaacatttgaaattgattttagaaacc
gaatgcggccgagtaatgctcgatgccatcgcctttaatgtggacttgaagacatggccc
gatgccaccattcagtacgcacaggtggtgtataaactcgatgtgaatgagtttaggggc
aatcagagtttgcagctgatggttgagcagatagagcccaagtag
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