Shewanella halifaxensis: Shal_0954
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Entry
Shal_0954 CDS
T00654
Name
(GenBank) DNA polymerase III chi subunit HolC
KO
K02339
DNA polymerase III subunit chi [EC:
2.7.7.7
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03030
DNA replication
shl03430
Mismatch repair
shl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shal_0954
03430 Mismatch repair
Shal_0954
03440 Homologous recombination
Shal_0954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shl03032
]
Shal_0954
03400 DNA repair and recombination proteins [BR:
shl03400
]
Shal_0954
Enzymes [BR:
shl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Shal_0954
DNA replication proteins [BR:
shl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Shal_0954
DNA repair and recombination proteins [BR:
shl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Shal_0954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_chi
Motif
Other DBs
NCBI-ProteinID:
ABZ75529
UniProt:
B0TV91
LinkDB
All DBs
Position
complement(1175949..1176452)
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AA seq
167 aa
AA seq
DB search
MFTSQSSSQSQAQFYLMPKDVNRASNAPKTALEQVYLLACQLAERAFTAHELVYIHCQDQ
QQAYAVDELLWQFEPQSFVPHNLKGEGPLGGAPVEIGFDRLGANKKRHLLINLADQVPQF
AVNFGQIIDFVANDDSHKAIARDRYRQYRALGIALSTQDIATQPINF
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atgtttacgagccaatcgtcaagccagtcgcaagcccagttttatctgatgccaaaggac
gttaatcgagcatccaatgcgcctaaaacagcgttagagcaagtgtacctgcttgcctgc
caattggccgagcgagcgtttaccgcacatgagctcgtttatattcattgccaagatcaa
cagcaagcttatgccgttgatgagcttctctggcaatttgaaccgcaatcatttgtgccc
cacaaccttaaaggtgaaggcccattaggcggtgcaccggtagaaattggctttgataga
cttggcgccaacaaaaaacgtcatcttcttattaatcttgcagaccaagtgccgcaattt
gcggtaaactttggacagattatcgatttcgttgccaacgacgatagccataaagcgatt
gctcgcgatcgctatcggcagtatcgcgcacttggaattgcattaagcacccaagatata
gcaacacaacctattaatttttag
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