Shewanella sp. MR-7: Shewmr7_1366
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Entry
Shewmr7_1366 CDS
T00389
Name
(GenBank) RNA polymerase, sigma 28 subunit
KO
K02405
RNA polymerase sigma factor FliA
Organism
shm
Shewanella sp. MR-7
Pathway
shm02020
Two-component system
shm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Shewmr7_1366
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Shewmr7_1366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shm03021
]
Shewmr7_1366
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
shm02035
]
Shewmr7_1366
Transcription machinery [BR:
shm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Shewmr7_1366
Bacterial motility proteins [BR:
shm02035
]
Flagellar system
Flagellar assembly proteins
Stator
Shewmr7_1366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UPF0122
HTH_23
HTH_10
Rv2175c_wHTH
Ketoacyl-synt_2
Motif
Other DBs
NCBI-ProteinID:
ABI42365
UniProt:
Q0HWZ0
LinkDB
All DBs
Position
1582068..1582781
Genome browser
AA seq
237 aa
AA seq
DB search
MNKAAAYTCLDSKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFD
GGKGAKFETFAGIRIRGAMLDEIRRGDWVPRSVHRNNRRVAQAIDELEQVLGRDARDTEI
AEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSQDILTPSDNVSDGTFEALAETQFHSALV
EAIKLLPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKHWT
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaagccgcagcgtatacttgtttagacagtaaaacgtcaatcgttgaacagtat
gcaccgttggttaaaagaattgcacatcacttgctcgccagattacctgcctcagtgcag
ctcgatgacttgcttcaagcagggatgatggggttgttagaagcatcatccaagtttgat
ggtggcaaaggtgcaaagtttgaaaccttcgccggcatacggatccgtggcgccatgttg
gatgagatccgtcgtggcgattgggttccccgttccgttcatcgtaataatcgtcgagtt
gctcaagccattgatgagttagagcaagtgttgggtcgtgatgcacgcgacacagaaatt
gcagaaaaacttgatatgacgctcgatgagtaccatcatattcttaacgatgtttctgtt
ggtaaaatcatagggatagaagacttaggcgtatcacaggatatactcactccgagcgat
aatgtgagtgatggtacatttgaagcactagcagagacccagtttcattcagcattagta
gaggcgataaaattattgcccgaaagagatgcgctagtgctatcgttatactacgatgaa
gcattgaatttaaaagaaattggcgccattcttgaggtgagcgagtcgcgagttagccag
atattaagtcaggcaatgttgcgactcaaaggcaaactcaagcattggacataa
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