Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_6584
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Entry
SHJGH_6584 CDS
T02531
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sho
Streptomyces hygroscopicus subsp. jinggangensis TL01
Pathway
sho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHJGH_6584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sho03019
]
SHJGH_6584
03016 Transfer RNA biogenesis [BR:
sho03016
]
SHJGH_6584
Enzymes [BR:
sho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SHJGH_6584
Messenger RNA biogenesis [BR:
sho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SHJGH_6584
Transfer RNA biogenesis [BR:
sho03016
]
Prokaryotic type
tRNA degradation factors
SHJGH_6584
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
KhpA-B_KH
DUF2017
Motif
Other DBs
NCBI-ProteinID:
AGF66247
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All DBs
Position
7458181..7460400
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AA seq
739 aa
AA seq
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MENETHYAEAVIDNGPFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQ
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQV
VATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDA
VFDMVVAGRVLEDGDVAIMMVEAEATEKTIKLVEGGAEAPTEEVVAAGLEAAKPFIKVLC
RAQADLAAKAAKPTAEFPIFLDYQDDVFEALTAAVRPELAQALTIAGKQERETELDRVKG
LAAEKLLPEFEGREKEISAAYRSLTKQLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSP
KRREIGHGALAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMMEAIDRPDEMSPHAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGAEITIEDDGTIYIGAADGPSAEAARTTINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL
VPVIEGEEGDETAKDDAEQ
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaggccgtcattgacaacggtcccttcggcacccgc
accatccgcttcgagacgggccgcctggccaagcaggccgccggttccgccgtggcgtac
ctggacgacgacaccatggtgctgtcggccaccaccgcctccaagaaccccaaggaccag
ctcgacttcttcccgctgacggtggacgtcgaggagcggatgtacgccgccggcaagatc
cccggcagcttcttccgccgtgagggccggccgtccgaggacgccatcctcacctgccgc
ctcatcgaccgtccgctgcgcccgtccttcaagaagggcctgcgcaacgagatccaggtc
gtcgccacgatcatggccctcaaccccgaccacctgtacgacgtcgtcgcgatcaacgcc
gcgtccgcgtccacgcagctggccggtctgcccttctccggcccgatcggcggcgtccgc
gtcgcgctgatccgcggccagtgggtcgccttcccgacgcacaccgagcttgaggacgcc
gtcttcgacatggtcgtcgccggtcgcgtcctggaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagaagaccatcaagctggtcgagggtggggccgaggcgccg
accgaggaggtcgtcgccgccggtctggaggccgccaagcccttcatcaaggtcctgtgc
cgcgcgcaggccgacctcgccgccaaggccgccaagccgaccgccgagttcccgatcttc
ctggactaccaggacgacgtgttcgaggcgctgaccgcggccgtccgccccgagctggcc
caggcgctcaccatcgccggcaagcaggagcgcgagaccgagctggaccgggtcaagggt
ctggccgccgagaagctcctgccggagttcgagggccgcgagaaggagatctccgccgcg
taccgctcgctcaccaagcagctggtccgcgagcgcgtgatcaaggagaagaagcgcatc
gacggccgcggtgtcaccgacatccgcaccctggccgccgaggtcgaggccatcccgcgg
gtgcacggttccgcgctgttcgagcgtggcgagacccagatcctgggcgtcaccaccctc
aacatgctccgcatggagcagcagctggacaccctctccccggtgacccgcaagcgctac
atgcacaactacaacttcccgccgtactccaccggtgagaccggccgcgtcggctccccg
aagcgccgcgagatcggccacggcgccctcgccgagcgcgccctggtgccggtgctgccg
acgcgcgaggagttcccgtacgcgatccgccaggtgtccgaggccctcggctccaacggc
tcgacgtccatgggctcggtctgcgcctccaccatgtcgctgctgaacgccggtgtgccg
ctgaaggccccggtcgccggtatcgccatgggtctgatctcccaggagatcgacggcgag
acgcactacgtcaccctcaccgacatcctcggtgcggaggacgccttcggcgacatggac
ttcaaggtcgccggcaccaaggacttcgtgaccgccctccagctcgacaccaagctggac
ggcatcccggcctccgtcctggccgcggccctcaagcaggcccgcgacgcccgcctccac
atcctcgacgtgatgatggaggccatcgaccggcccgacgagatgagcccgcacgctccg
cggatcatcaccgtcaagatcccggtcgacaagatcggtgaggtcatcggccctaagggc
aagatgatcaaccagatccaggaggacacgggcgccgagatcaccatcgaggacgacggc
acgatctacatcggcgccgccgacggcccctccgccgaggccgcccgcaccacgatcaac
ggcatcgccaacccgacgatgcccgaggtcggcgagcggtacctgggtacggtcgtcaag
acgaccaccttcggtgcgttcgtctccctgctgcccggcaaggacggtctgctgcacatc
tcgcagatccgcaagctcgccggcggcaagcgcgtggagaacgtcgaggacgtgctcggc
gtgggccagaaggtccaggtcgagatcgccgagatcgactcccgcggcaagctctccctc
gttccggtgatcgagggcgaggaaggcgacgagaccgcgaaggacgacgccgagcagtga
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