KEGG   Shewanella putrefaciens 200: Sput200_1775Help
Entry
Sput200_1775      CDS       T02015                                 

Definition
(GenBank) DNA ligase (ATP)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
shp  Shewanella putrefaciens 200
Pathway
shp03030  DNA replication
shp03410  Base excision repair
shp03420  Nucleotide excision repair
shp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:shp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Sput200_1775
   03410 Base excision repair
    Sput200_1775
   03420 Nucleotide excision repair
    Sput200_1775
   03430 Mismatch repair
    Sput200_1775
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shp03032]
    Sput200_1775
   03400 DNA repair and recombination proteins [BR:shp03400]
    Sput200_1775
Enzymes [BR:shp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Sput200_1775
    6.5.1.6  DNA ligase (ATP or NAD+)
     Sput200_1775
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Sput200_1775
DNA replication proteins [BR:shp03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Sput200_1775
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Sput200_1775
DNA repair and recombination proteins [BR:shp03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Sput200_1775
   NER (nucleotide excision repair)
    Other NER factors
     Sput200_1775
   MMR (mismatch exicision repair)
    Other MMR factors
     Sput200_1775
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ADV54234
UniProt: E6XIY7
LinkDB All DBs
Position
2019149..2020078
Genome map
AA seq 309 aa AA seqDB search
MTHTSQLFLLISNPFILLRLLLVSFLLVCLSVNANPSAPKIQLATELTADKTSYDIREFL
ISEKLDGVRGYWNGHRLVTRQGYPINAPVWFTADFPAIPIDGELWLGRGQFEAISSLIRQ
SSPKEDAWRNVRFMVFDLPKAEGNFEQRYRLAINMFAGKSAYIEVIEQFQLDSIEALYQK
LDSLVVLGAEGLMLHRRSAYYIAGRNPNLMKLKPYFDAEAKVIAHIAGKGQFTGQMGALK
VQTSDGRIFSIGTGFSHAERQHPPAVGTIITYKYLGLTVNGLPRFASFLRVRTDIVESPL
DGGVDRSGQ
NT seq 930 nt NT seq  +upstreamnt  +downstreamnt
atgactcatacaagccaattatttcttttaatctctaatcctttcattctgttgcggtta
ttattagtttcttttctgctggtatgtctatcggttaatgccaaccccagtgcgcctaag
atccaacttgccacagagctgactgccgacaagacgagttatgatattcgcgagttttta
atcagtgaaaagttagatggtgttcgtggttactggaatgggcataggttagtcacccgt
caaggatatcccattaatgcacccgtatggtttactgctgactttcccgcaattcctatt
gatggagagttgtggcttgggcgagggcaatttgaagctatttcaagtttaatccgtcaa
tcctctcctaaagaggacgcatggcgtaatgtacgctttatggtatttgacttacccaaa
gcggaggggaattttgagcagcgctatcgattggcgataaatatgtttgcgggtaaatct
gcttatattgaggtcattgagcaatttcagcttgatagtattgaggctttataccaaaaa
ctcgatagccttgtggttttaggtgctgaagggttaatgctccatcgccgcagtgcatac
tatattgcaggccgaaatccaaacttgatgaagttaaaaccctactttgatgcagaagct
aaagtcattgcacatattgcaggtaaaggtcaatttacgggacagatgggggcattaaaa
gtacaaacatccgatgggcggatttttagtatcggcacaggctttagtcatgctgagcgc
caacatccccccgcagtgggcactatcattacctataaataccttgggcttaccgttaac
ggtttaccgcggtttgccagttttttacgggtaagaaccgatatagtcgagtccccattg
gacggcggtgttgaccgttctgggcaataa

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