Sarcophilus harrisii (Tasmanian devil): 100914649
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Entry
100914649 CDS
T02286
Gene name
RXRB
Definition
(RefSeq) retinoic acid receptor RXR-beta isoform X2
KO
K08525
retinoid X receptor beta
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03320
PPAR signaling pathway
shr04659
Th17 cell differentiation
shr04919
Thyroid hormone signaling pathway
shr04920
Adipocytokine signaling pathway
shr04928
Parathyroid hormone synthesis, secretion and action
shr05200
Pathways in cancer
shr05202
Transcriptional misregulation in cancer
shr05216
Thyroid cancer
shr05222
Small cell lung cancer
shr05223
Non-small cell lung cancer
shr05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
100914649 (RXRB)
09152 Endocrine system
04920 Adipocytokine signaling pathway
100914649 (RXRB)
03320 PPAR signaling pathway
100914649 (RXRB)
04919 Thyroid hormone signaling pathway
100914649 (RXRB)
04928 Parathyroid hormone synthesis, secretion and action
100914649 (RXRB)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100914649 (RXRB)
05202 Transcriptional misregulation in cancer
100914649 (RXRB)
09162 Cancer: specific types
05226 Gastric cancer
100914649 (RXRB)
05216 Thyroid cancer
100914649 (RXRB)
05222 Small cell lung cancer
100914649 (RXRB)
05223 Non-small cell lung cancer
100914649 (RXRB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shr03000
]
100914649 (RXRB)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
shr03310
]
100914649 (RXRB)
Transcription factors [BR:
shr03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
100914649 (RXRB)
Nuclear receptors [BR:
shr03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
100914649 (RXRB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
100914649
NCBI-ProteinID:
XP_012404417
Ensembl:
ENSSHAG00000006089
LinkDB
All DBs
Position
4
AA seq
461 aa
AA seq
DB search
MGDSGRDCRSPDSSSLSSSPQPPPRGGPPPSPGPPLAPLPSAASSLLGTGGPSQLPLGSP
FPVISSSMGSPGLPPPAPPGPYGPVSSPQINSTVSLPGGGSGTPEDVKPPLLGVRGLHCP
PPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKR
QRNRCQYCRYQKCLATGMKREAVQEERQRGKEKDGEGEGAGGAPEEMPVDRILEAELAVE
QKSDQGVEGPGGAGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILL
RAGWNELLIASFSHRSISVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMR
MDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLESYCKQKYPEQQGRFAKLLLR
LPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacagcgggcgggactgtagaagcccagacagctcctccctgagctcgtcccca
cagcctcctccccgggggggccctcccccttctcctgggccccccctggctcccctaccc
tctgcagcttcatcccttctaggaacaggaggcccatcccaactcccacttggctccccc
ttccctgtcatcagctcctcaatggggtcgcctgggctgcctcccccagcccctcctgga
ccctatggccctgtcagcagtccccagattaactccacagtgtcactccctgggggaggg
tccggaaccccagaagatgtgaagccaccattgttgggtgttcgaggcctacactgtcca
cctcccccaggaggtccaggggctggcaaacgtctttgtgcaatctgtggggacaggagt
tcaggcaaacactatggggtctacagctgtgaaggttgtaaaggtttcttcaaacgaacc
atccgaaaggacttgacctactcatgtcgggacaacaaggattgcactgtggacaagcgg
caacggaaccgctgtcagtattgccgctaccagaaatgccttgccactggcatgaagagg
gaggcggtacaggaggaacgtcaaaggggcaaggagaaggacggggaaggggagggggcc
gggggggcccctgaggagatgcctgtggacaggatcctggaggctgaactcgccgtggag
cagaagagtgaccagggcgtagaagggcccgggggggccgggggcggcggcagtagccca
aatgaccctgtgaccaacatctgtcaggcagcagacaaacagctgtttacattggttgag
tgggcaaagaggatcccacacttctcctctctgcctctggatgaccaggtcatcttactt
cgagcaggctggaatgagctgctcatcgcttccttctcccatcgttccatctccgtcagg
gatggcattcttcttgccacaggactccatgttcatcgaaactctgctcattcagctggt
gttggagccatttttgatcgggtgctgactgaactggtgtccaagatgcgtgatatgcga
atggataagacagaacttggctgtctgagggcaattatcttattcaatccagatgccaag
ggcctctccaaccctggagaggtagagattctgagagagaaagtctatgcatctttggag
tcatactgtaaacagaaataccctgagcagcagggacggtttgcaaagctgctccttcgc
ctccctgccctccgctctattggcctcaagtgcttggagcatctgtttttcttcaagctc
atcggggacacgcccattgataccttcctcatggagatgctagaggcaccacaccagctt
gcctaa
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