KEGG   Sarcophilus harrisii (Tasmanian devil): 100914649
Entry
100914649         CDS       T02286                                 

Gene name
RXRB
Definition
(RefSeq) retinoic acid receptor RXR-beta isoform X2
  KO
K08525  retinoid X receptor beta
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03320  PPAR signaling pathway
shr04659  Th17 cell differentiation
shr04919  Thyroid hormone signaling pathway
shr04920  Adipocytokine signaling pathway
shr04928  Parathyroid hormone synthesis, secretion and action
shr05200  Pathways in cancer
shr05202  Transcriptional misregulation in cancer
shr05216  Thyroid cancer
shr05222  Small cell lung cancer
shr05223  Non-small cell lung cancer
shr05226  Gastric cancer
Brite
KEGG Orthology (KO) [BR:shr00001]
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    100914649 (RXRB)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    100914649 (RXRB)
   03320 PPAR signaling pathway
    100914649 (RXRB)
   04919 Thyroid hormone signaling pathway
    100914649 (RXRB)
   04928 Parathyroid hormone synthesis, secretion and action
    100914649 (RXRB)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100914649 (RXRB)
   05202 Transcriptional misregulation in cancer
    100914649 (RXRB)
  09162 Cancer: specific types
   05226 Gastric cancer
    100914649 (RXRB)
   05216 Thyroid cancer
    100914649 (RXRB)
   05222 Small cell lung cancer
    100914649 (RXRB)
   05223 Non-small cell lung cancer
    100914649 (RXRB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:shr03000]
    100914649 (RXRB)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:shr03310]
    100914649 (RXRB)
Transcription factors [BR:shr03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    100914649 (RXRB)
Nuclear receptors [BR:shr03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   100914649 (RXRB)
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1
Other DBs
NCBI-GeneID: 100914649
NCBI-ProteinID: XP_012404417
Ensembl: ENSSHAG00000006089
LinkDB
Position
4
AA seq 461 aa
MGDSGRDCRSPDSSSLSSSPQPPPRGGPPPSPGPPLAPLPSAASSLLGTGGPSQLPLGSP
FPVISSSMGSPGLPPPAPPGPYGPVSSPQINSTVSLPGGGSGTPEDVKPPLLGVRGLHCP
PPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKR
QRNRCQYCRYQKCLATGMKREAVQEERQRGKEKDGEGEGAGGAPEEMPVDRILEAELAVE
QKSDQGVEGPGGAGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILL
RAGWNELLIASFSHRSISVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMR
MDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLESYCKQKYPEQQGRFAKLLLR
LPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
NT seq 1386 nt   +upstreamnt  +downstreamnt
atgggcgacagcgggcgggactgtagaagcccagacagctcctccctgagctcgtcccca
cagcctcctccccgggggggccctcccccttctcctgggccccccctggctcccctaccc
tctgcagcttcatcccttctaggaacaggaggcccatcccaactcccacttggctccccc
ttccctgtcatcagctcctcaatggggtcgcctgggctgcctcccccagcccctcctgga
ccctatggccctgtcagcagtccccagattaactccacagtgtcactccctgggggaggg
tccggaaccccagaagatgtgaagccaccattgttgggtgttcgaggcctacactgtcca
cctcccccaggaggtccaggggctggcaaacgtctttgtgcaatctgtggggacaggagt
tcaggcaaacactatggggtctacagctgtgaaggttgtaaaggtttcttcaaacgaacc
atccgaaaggacttgacctactcatgtcgggacaacaaggattgcactgtggacaagcgg
caacggaaccgctgtcagtattgccgctaccagaaatgccttgccactggcatgaagagg
gaggcggtacaggaggaacgtcaaaggggcaaggagaaggacggggaaggggagggggcc
gggggggcccctgaggagatgcctgtggacaggatcctggaggctgaactcgccgtggag
cagaagagtgaccagggcgtagaagggcccgggggggccgggggcggcggcagtagccca
aatgaccctgtgaccaacatctgtcaggcagcagacaaacagctgtttacattggttgag
tgggcaaagaggatcccacacttctcctctctgcctctggatgaccaggtcatcttactt
cgagcaggctggaatgagctgctcatcgcttccttctcccatcgttccatctccgtcagg
gatggcattcttcttgccacaggactccatgttcatcgaaactctgctcattcagctggt
gttggagccatttttgatcgggtgctgactgaactggtgtccaagatgcgtgatatgcga
atggataagacagaacttggctgtctgagggcaattatcttattcaatccagatgccaag
ggcctctccaaccctggagaggtagagattctgagagagaaagtctatgcatctttggag
tcatactgtaaacagaaataccctgagcagcagggacggtttgcaaagctgctccttcgc
ctccctgccctccgctctattggcctcaagtgcttggagcatctgtttttcttcaagctc
atcggggacacgcccattgataccttcctcatggagatgctagaggcaccacaccagctt
gcctaa

KEGG   Sarcophilus harrisii (Tasmanian devil): 100926708
Entry
100926708         CDS       T02286                                 

Gene name
RXRA
Definition
(RefSeq) retinoic acid receptor RXR-alpha isoform X3
  KO
K08524  retinoid X receptor alpha
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03320  PPAR signaling pathway
shr04151  PI3K-Akt signaling pathway
shr04659  Th17 cell differentiation
shr04919  Thyroid hormone signaling pathway
shr04920  Adipocytokine signaling pathway
shr04928  Parathyroid hormone synthesis, secretion and action
shr04932  Non-alcoholic fatty liver disease
shr04976  Bile secretion
shr05160  Hepatitis C
shr05200  Pathways in cancer
shr05202  Transcriptional misregulation in cancer
shr05216  Thyroid cancer
shr05222  Small cell lung cancer
shr05223  Non-small cell lung cancer
shr05226  Gastric cancer
Brite
KEGG Orthology (KO) [BR:shr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    100926708 (RXRA)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    100926708 (RXRA)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    100926708 (RXRA)
   03320 PPAR signaling pathway
    100926708 (RXRA)
   04919 Thyroid hormone signaling pathway
    100926708 (RXRA)
   04928 Parathyroid hormone synthesis, secretion and action
    100926708 (RXRA)
  09154 Digestive system
   04976 Bile secretion
    100926708 (RXRA)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100926708 (RXRA)
   05202 Transcriptional misregulation in cancer
    100926708 (RXRA)
  09162 Cancer: specific types
   05226 Gastric cancer
    100926708 (RXRA)
   05216 Thyroid cancer
    100926708 (RXRA)
   05222 Small cell lung cancer
    100926708 (RXRA)
   05223 Non-small cell lung cancer
    100926708 (RXRA)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    100926708 (RXRA)
  09172 Infectious disease: viral
   05160 Hepatitis C
    100926708 (RXRA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:shr03000]
    100926708 (RXRA)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:shr03310]
    100926708 (RXRA)
Transcription factors [BR:shr03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    100926708 (RXRA)
Nuclear receptors [BR:shr03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   100926708 (RXRA)
SSDB
Motif
Pfam: Nuc_recep-AF1 Hormone_recep zf-C4
Other DBs
NCBI-GeneID: 100926708
NCBI-ProteinID: XP_012409469
Ensembl: ENSSHAG00000015645
LinkDB
Position
2
AA seq 467 aa
MDTKHFLPLDFSTQVNSTSLNSPTGRGSMAAPSLHPSIGPGLGSSLGSSSQLHSPISTLS
SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPLGLNG
VLKVPAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKI
LEAELAVEPKTETYIEANMGLNPNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLD
DQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVS
KMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRF
AKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggacaccaaacatttcctgccgctggatttttccacccaggtcaattccacatccctg
aattcccccactggcagagggtccatggctgccccctccctgcacccgtccattggcccc
ggccttggctcgtccctcggatcatccagccagctgcactcccccatcagcactctgagc
tcccccattaatggcatgggccctcccttctctgtcatcagctcccccatggggcctcac
tcaatgtctgttcccacaacccccacccttgggtttgggaccggcagcccccagctcaac
tcgccaatgaaccctgtcagcagcacagaagatattaagccacctcttgggctcaatgga
gttcttaaagtgcccgcccatccctcaggaaccatggcctccttcaccaagcacatatgt
gccatctgtggggaccgctcctcaggtaaacattatggtgtgtacagttgtgaaggctgc
aaaggcttcttcaagagaacggtccgcaaggacctcacctacacctgccgagataataag
gactgcctgattgacaaacgccagaggaaccggtgccaatactgccgctaccagaagtgt
cttgccatgggcatgaagcgagaagctgtgcaagaagagaggcagaggggcaaagaccgg
aatgagaacgaggtggaatcaaccagtagtgctaatgaggacatgccagtggaaaagatc
ttggaagctgaactcgctgtggagccaaagacagagacgtacattgaggcaaacatggga
ctgaatcccaattcgcccaacgaccccgttaccaacatttgccaagcagcagacaaacag
ctcttcaccttggtggaatgggccaagagaatcccccacttctcagaactacccctggat
gaccaggtcattctattgcgagcgggctggaatgaactgctcatcgcctcgttctctcac
cgctcgatagcagtgaaagatgggatccttcttgccaccggcctccacgtccataggaac
agcgctcacagtgcaggggtgggcgccatctttgacagagtcctgacagaacttgtgtca
aaaatgcgagacatgcagatggacaagacagagctgggctgcctgagagccattgtcctc
ttcaaccctgactctaaaggactttccaaccctgcggaagtagaagccctacgagagaaa
gtttacgcttccctcgaagcctactgcaaacacaagtatccggaccagcctgggaggttc
gccaagctcttgctccgtctccccgctctccggtccatcggtctgaaatgcttggagcac
ctcttcttcttcaagctaataggagatacccccattgacaccttcctgatggagatgttg
gaggcaccccaccaaatgacatag

KEGG   Sarcophilus harrisii (Tasmanian devil): 100932014
Entry
100932014         CDS       T02286                                 

Gene name
RXRG
Definition
(RefSeq) retinoic acid receptor RXR-gamma isoform X1
  KO
K08526  retinoid X receptor gamma
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03320  PPAR signaling pathway
shr04659  Th17 cell differentiation
shr04919  Thyroid hormone signaling pathway
shr04920  Adipocytokine signaling pathway
shr04928  Parathyroid hormone synthesis, secretion and action
shr05200  Pathways in cancer
shr05202  Transcriptional misregulation in cancer
shr05216  Thyroid cancer
shr05222  Small cell lung cancer
shr05223  Non-small cell lung cancer
shr05226  Gastric cancer
Brite
KEGG Orthology (KO) [BR:shr00001]
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    100932014 (RXRG)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    100932014 (RXRG)
   03320 PPAR signaling pathway
    100932014 (RXRG)
   04919 Thyroid hormone signaling pathway
    100932014 (RXRG)
   04928 Parathyroid hormone synthesis, secretion and action
    100932014 (RXRG)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100932014 (RXRG)
   05202 Transcriptional misregulation in cancer
    100932014 (RXRG)
  09162 Cancer: specific types
   05226 Gastric cancer
    100932014 (RXRG)
   05216 Thyroid cancer
    100932014 (RXRG)
   05222 Small cell lung cancer
    100932014 (RXRG)
   05223 Non-small cell lung cancer
    100932014 (RXRG)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:shr03000]
    100932014 (RXRG)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:shr03310]
    100932014 (RXRG)
Transcription factors [BR:shr03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    100932014 (RXRG)
Nuclear receptors [BR:shr03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   100932014 (RXRG)
SSDB
Motif
Pfam: Nuc_recep-AF1 Hormone_recep zf-C4
Other DBs
NCBI-GeneID: 100932014
NCBI-ProteinID: XP_012403075
Ensembl: ENSSHAG00000015367
LinkDB
Position
4
AA seq 467 aa
MYGNYSHFMKFPAGFGSSLSHTNSTSMSPSPALATGKSPDSHSNYIEAPVSVPRTLASPL
NAIASPLNALGSSYRVITSAIGPHSLSLATSPGVNMVGPPSSQLNVMNNVRSSDDVKPLP
GIQGMGTMSYPSTSPGSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCR
DNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERSENEVESTSSGHEDMPV
ERILEAELAVEPKTESYGNTNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLE
DQVILLRAGWNELLIASFSHRSVTVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVS
KMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVEALREKVYATLEAYTKQKYPDQPGRF
AKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPLQIT
NT seq 1404 nt   +upstreamnt  +downstreamnt
atgtatggaaattactctcacttcatgaagtttcctgcaggctttggcagttctctcagt
cacactaactccacatctatgagcccatcaccagccctggccacaggaaaatcaccggac
agtcactccaactacattgaggccccagtcagtgttccaaggacacttgcctccccactg
aatgccatcgcgtctcctctgaatgctctgggctcttcatacagggtcattacatcagcc
ataggacctcattcattatccctggctacctctccaggtgtcaacatggttggtccacct
agctctcagctcaatgtcatgaacaatgtcagaagctcagatgatgtcaagcctttgcca
gggattcaaggaatgggaaccatgagctatccatccactagtccaggctcccttgccaaa
catatctgtgccatctgtggagacagatcctcaggaaagcactatggggtatacagttgt
gaaggttgtaaaggattcttcaagaggaccataaggaaagacctcatctatacatgccgg
gataacaaggactgcctcattgataagcgccaacgtaaccgctgccaatattgccgctat
cagaagtgccttgtcatgggtatgaagagggaagctgtgcaagaagagaggcagagaagt
cgggagaggtctgagaatgaagtggagtccaccagcagtggccatgaagacatgcccgtg
gagaggatcctagaagccgagctcgctgttgaaccaaagactgaatcctatggtaacaca
aacatggagaattcaacaaatgatcccgtcaccaatatatgccatgctgctgataagcag
ctctttactcttgttgaatgggccaaacgcatcccccacttctctgacctcactttggaa
gaccaagttattcttcttcgagcaggctggaatgaattgctgattgcctccttctcccat
cgctccgtgactgtacaggatggaatcctcctggccactggtttacatgttcaccgaagc
agtgcccatagtgccggtgtggggtccatctttgacagagttctcactgagctggtttct
aaaatgaaagacatgcagatggataaatccgagttaggctgcctgcgggccattgtcctg
tttaacccagatgctaagggtttgtccaacccctctgaagtggaagctctccgagagaag
gtttatgctacccttgaagcatacaccaagcaaaaataccctgatcagcctggcaggttt
gccaagctcctgcttcgactcccggccctcaggtccatcggcttgaaatgtcttgagcac
ctctttttcttcaagctcattggagacacacccattgatacttttctcatggagatgctg
gaaacccctctccagattacctga

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