KEGG   Sarcophilus harrisii (Tasmanian devil): 100921184
Entry
100921184         CDS       T02286                                 
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100921184 (CNOT4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:shr03000]
    100921184 (CNOT4)
   03019 Messenger RNA biogenesis [BR:shr03019]
    100921184 (CNOT4)
   04121 Ubiquitin system [BR:shr04121]
    100921184 (CNOT4)
Enzymes [BR:shr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100921184 (CNOT4)
Transcription factors [BR:shr03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    100921184 (CNOT4)
Messenger RNA biogenesis [BR:shr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100921184 (CNOT4)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     100921184 (CNOT4)
Ubiquitin system [BR:shr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    100921184 (CNOT4)
SSDB
Motif
Pfam: zf-RING_4 RRM_1 zf-C3HC4_3 zf-UDP zf-C3HC4_2 zf-RING_2 Rtf2 Nup35_RRM_2 DZR_2 zf-CCCH_2 Torus zf-C3HC4
Other DBs
NCBI-GeneID: 100921184
NCBI-ProteinID: XP_031794977
Ensembl: ENSSHAG00000013639
LinkDB
Position
5:complement(183874021..183990325)
AA seq 710 aa
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGENSQQISNSDTPSPP
PGLSKPNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSND
WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKEL
SVQDQPSLSPTSLQNPSSHTTTAKGPGPGFLHPAAPTNANSLSSTFSVLPQRFPQFQQHR
AVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIPIAD
NNSSVESLNMKEWQDGLRALLPNININFGGLPNASSPSNANHSAPTSNTAPTDSLNWDSP
GSWMDPAIITGIPASTGNNLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSNPFSTQ
IPLHRASWNPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgtctcgcagtcctgatgcaaaggaagaccctgtggaatgccccctttgcatggagccc
ttagagatcgatgatatcaactttttcccttgcacttgtggctaccaaatttgccgcttc
tgttggcatcgtattcgcactgatgagaatggactttgtcctgcttgcagaaagccatat
ccagaagacccagcagtgtataaaccactctcccaggaagaactgcaaaggataaagaat
gagaaaaaacagaagcagaatgaaaggaaacagaagatatcagagaaccgtaaacacttg
gcaagtgtacgtgtggtacaaaagaacctcgtttttgtggtaggactctcccagcgttta
gcagacccagaggttttaaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagtacatcatatgcaggctcacagggtccaagtgccagtgcttat
gtcacctatatccggtcagaagatgctctcagagccatacagtgtgtcaacaacgtagta
gtagatggcagaacacttaaggcttctctaggtacaacaaaatactgcagttacttccta
aagaatatgcagtgtccaaaaccggactgtatgtatctacatgaattgggggatgaagca
gctagcttcacaaaagaggaaatgcaggcgggtaaacaccaagagtatgaacagaagcta
cttcaagaattatataaattaaaccccaattttcttcagttatctacgggttccgttgac
aagaataagaacaaagtgacgccactgcagagccccattgacaaaccttcagattccctc
agtatagggaatggtgaaaattcccaacagatatctaacagtgatacaccatcaccacct
cctggtttatcaaaacctaatccagtcatccccatcagttcatctaatcacagtgcaagg
tccccttttgaaggggcagtaacagagtcacagtcactattctcggacaacttccggcac
cctaaccctatccctagtgggttacccccattccccagttccccacagacttccaatgac
tggccaacagcaccagaaccacagagcctcttcacatcagaaacaatcccagtgtcatcc
tctacagactggcaagcagcatttggctttggttcctctaaacagcaagaggatgacttg
gggtttgacccctttgacatcactcgcaaagccttagcagacctgattgagaaggaactg
tcagtccaagatcaaccttccctttcgcccacatctcttcagaacccttcctcacacact
acaaccgccaaagggccaggccctggatttctgcatcctgccgcacccacaaatgccaac
tctctcagtagcaccttttcagtcttgccacagaggttccctcagtttcagcaacaccgg
gcggtttataattcattcagttttccaggccaggcagcccgctatccttggatggccttt
ccacgaaatagcatcatgcacttgaaccacacagcaaatcccacctcaaatagtaatttc
ttggacttgaatctcccgccacagcacagcacaggtctgggagggatccctatagcagac
aacaacagttctgtagagagtttaaatatgaaggaatggcaggacgggctaagggcactt
ctacccaacattaacatcaactttggtggactgcccaatgcttcttccccctccaacgcc
aaccacagtgcaccaacgtccaacactgcccccacggacagcctgaattgggacagccct
ggcagctggatggaccccgccatcatcacaggtatcccagcatcaacaggaaataattta
gactctcttcaagatgacaatcctccacactggctaaaatcccttcaggccctcacagag
atggacggccccagtgctgctccgtcacaaacccatcacagtaaccccttcagcacacag
atccctctgcacagagccagctggaatccttattctcccccttcaaatcccaccagtttc
cattccccacccccaggctttcagaccgccttcagaccacccagcaaaaccccgacagat
ttactacagagttctgcactggaccgccattag

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