Stereum hirsutum: STEHIDRAFT_117410
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Entry
STEHIDRAFT_117410 CDS
T03127
Name
(RefSeq) hypothetical protein
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
shs
Stereum hirsutum
Pathway
shs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
STEHIDRAFT_117410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shs03019
]
STEHIDRAFT_117410
Messenger RNA biogenesis [BR:
shs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
STEHIDRAFT_117410
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
18796098
NCBI-ProteinID:
XP_007298830
JGI:
Stehi1_117410
LinkDB
All DBs
Position
Unknown
AA seq
578 aa
AA seq
DB search
MDDDDEFLYGESATPEPARSSVVTPVTLISTSVPQPIPLDKTSISNGPVAQLEAKVAEQN
ELVQLDDTDIFPDIPPADTRPSEPPSQQSQPTQPEGQAEDEQGDEDAEGEEDEEEAEGEE
SEDDIEFIMEPQSRSLDLRPNRPAAGNRTLSATAAPSKAPQQPGPSLTTEYTPRDRGGNL
TKSTSQAQLATPTSSQTTNALNTSTSKPQAGSTDPAQSQTPVDEGPDPSTLPSVTAPASH
PSVNPGATGVLDGRSILDFDVANMTDKAWRRPGSDISDWFNYGFDEISWEAYCYRRRDVG
EVANVLKANVLNFAGLPEDQLSQLPPEMRTMVMAGSTAMMNNGGGGQMMGPGMNVNGMMG
PGDMNMQGMMNPIMGGMGMGGDMGMDGPGQGGNGGGDQGMGQGMGVGDGFGPQGGPGGMM
GGMGMGGEFGMQDPNAMQQGMFPGMDGPQGPTPVPVGINRGGQGTPNPNVYNRGRGMGPG
MGIRGRGSYTGRGRGMPAPPVRPASPLPPNVPTGPRNQNKYKDRDNNGPAVDGLDYGGGA
GGQDRSGSTPIGDYEERSSSRKRRDRSPTDERRDSKRR
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgacgacgaatttctctacggtgaatcggccaccccagagcctgcacgttca
agtgtcgtgacgcccgtgacgctgatctcaacttctgtccctcaaccaataccgttggac
aagacatcaatttccaatggccccgtcgcacagttggaggccaaggtggccgagcagaat
gaactcgtccaattagacgacacggacatctttccggacattcctcctgccgacaccaga
ccctctgaacctccatcacaacagtcacaaccgactcagccagaaggacaggcagaggat
gagcagggagatgaggatgctgagggggaagaagacgaagaagaggctgagggcgaggag
agcgaagacgacattgagtttatcatggaaccccaatctcggtctctcgacctgagacca
aaccggcctgcagcaggcaaccgtacattgagcgccacagccgctccatcaaaagcgcca
caacaacccggtccctcattaacaactgaatatacaccccgcgaccgcggcggcaacctc
acaaaatccacaagccaagctcaactcgccactcccacctcctcccaaacgaccaatgcc
ctcaacacttccacctcaaaaccccaagccgggtccactgaccccgcacagtcacaaaca
ccagtcgatgaaggtcccgacccatccactttgccatccgtaactgctccggcttcgcac
ccctctgtgaaccctggtgcgacgggcgtattggatggtagatcaatattggatttcgat
gtggcgaatatgacggacaaggcttggaggaggcctggttcggatatcagcgactggttc
aattacggtttcgacgagatcagctgggaggcatattgttacaggaggagagacgtcggg
gaggtggcgaatgtactcaaggcgaatgttctgaacttcgcaggactgcccgaagaccag
ctcagccagcttccacccgagatgcgaacgatggtcatggctggctctactgctatgatg
aacaacggtgggggtggacagatgatgggtccaggcatgaacgtcaatggcatgatgggt
cccggggacatgaacatgcaagggatgatgaaccctatcatgggcggaatgggtatgggt
ggcgatatgggcatggatggaccgggacaaggaggaaatggtggaggcgaccaggggatg
ggacaagggatgggtgttggggatggattcgggcctcaaggcgggcccggtgggatgatg
ggtggaatgggtatgggcggggagttcggcatgcaggatccaaacgcaatgcaacaaggc
atgtttcccggaatggacggtcctcagggccctacgcctgttcccgttggcatcaatcgc
ggtggccaaggtacacctaacccgaatgtgtacaatcgaggacgcgggatgggcccagga
atgggcattcgtggtcgagggagttataccggccgaggccgaggaatgccagcgcccccc
gttcgacccgcatcaccattgcctcccaatgtacccaccggaccgcggaatcagaacaag
tacaaggaccgcgacaacaatgggcctgcggttgacgggttggactatggtggtggtgca
ggtggtcaagatcgaagcggcagcacgccaattggtgattacgaggaaaggagcagcagc
cggaaacgacgggaccgttcgcctactgacgagaggcgggactcaaagcggcgatga
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integrated database retrieval system
