KEGG   Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_2641Help
Entry
SHJG_2641         CDS       T02063                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
shy  Streptomyces hygroscopicus subsp. jinggangensis 5008
Pathway
shy03030  DNA replication
shy03410  Base excision repair
shy03420  Nucleotide excision repair
shy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:shy00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    SHJG_2641
   03410 Base excision repair
    SHJG_2641
   03420 Nucleotide excision repair
    SHJG_2641
   03430 Mismatch repair
    SHJG_2641
Enzymes [BR:shy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SHJG_2641
    6.5.1.6  DNA ligase (ATP or NAD+)
     SHJG_2641
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SHJG_2641
DNA replication proteins [BR:shy03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SHJG_2641
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SHJG_2641
DNA repair and recombination proteins [BR:shy03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SHJG_2641
   NER (nucleotide excision repair)
    Other NER factors
     SHJG_2641
   MMR (mismatch exicision repair)
    Other MMR factors
     SHJG_2641
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AEY87915
UniProt: H2K393
LinkDB All DBs
Position
3154582..3156120
Genome map
AA seq 512 aa AA seqDB search
MLLTRLAQVSREVAATAARSRKIALLAELFRDAEADDVPIVIPYLAGRLPQGRLGVGWKV
LGRPVPPAAEPSLTVREVDARLTGLGKVSGPGSQAERTRIVGELMGAATEEEQRFLLGLL
TGEVRQGALDAVAVEGLARATGADPADVRRAVMLAGSLQTVAQALLGEGPGSLDRFRLTV
GRPVLPMLAHSASSVAEAVEKLGACAVEEKLDGIRVQVHRDGDTVRIHTRTLDDITGRLP
EVTSAALELGGERFILDGEVISFDAAGRPRSFQETAGRVGSRTDVARAAGQTPVSPVFFD
ALSVDGRDLLDLPFAERHAELARLVPEPMRVRRTVASGPEDIPEAERFLADTLARGHEGV
VVKALDAPYSAGRRGAAWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARTPDGGFA
MLGKTFKGMTDAMLAWQTERLKELAVEDNGWVVRVRPELVVEIAYDGLQRSTRYPAGVTL
RFARVVRYREDKRPEEADTVEALLAAHPEVSP
NT seq 1539 nt NT seq  +upstreamnt  +downstreamnt
atgctgctgacccggttggcccaggtgtcccgggaggtcgccgcgacggcggcgcggtcc
cggaagatcgcgctgctcgcggagctgttccgggacgcggaggcggacgacgtgccgatc
gtcatcccctatctcgccggccggctgccgcagggccggctcggcgtcggctggaaggtg
ctgggccgcccggtcccgcccgccgccgagccctccctcaccgtgcgggaggtcgacgcc
cggctcaccgggctgggcaaggtgtccgggcccggctcccaggccgagcggacccggatc
gtcggggagctgatgggcgcggccaccgaggaggagcagcgcttcctgctcggcctgctc
accggcgaggtgcggcagggcgcgctggacgcggtcgccgtggaggggctggcccgggcg
accggcgcggacccggcggacgtgcgccgggccgtgatgctggcggggtcgttgcagacg
gtggcgcaggccctgctcggcgaggggcccggatcgctcgaccgcttccggctcacggtc
ggccggccggtgctgccgatgctggcgcacagcgcgtcctcggtcgcggaggcggtggag
aagctgggcgcgtgcgcggtggaggagaagctggacggcatccgggtccaggtccaccgg
gacggcgacacggtccggatccacacccgcaccctggacgacatcaccggccggctgccc
gaagtgacctccgccgcgctggagttggggggcgagcggttcatcctggacggcgaggtg
atctccttcgacgcggcgggccggccccggtccttccaggagacggcgggccgggtcggc
tcgcgcacggacgtggcgagggcggccggacagaccccggtctcccccgtcttcttcgac
gccctctcggtcgacggccgtgacctgctcgacctgcccttcgccgagcggcacgcggag
ctggcccggctggtgccggagccgatgcgggtccggcgcacggtggcctcgggcccggag
gacatcccggaggcggaacggttcctcgccgacaccctggcccgcggccacgagggcgtg
gtggtcaaggcgctcgacgcgccctacagcgcgggccggcgcggcgccgcctggctgaag
gtcaagcccgtgcacaccctcgacctggtggtgctggccgccgagtggggtcacggccgg
cgcaccggcaagctctccaacctccacctcggcgcccgcaccccggacggcggcttcgcc
atgctcggcaagaccttcaagggcatgaccgacgcgatgctcgcctggcagaccgagcgg
ctgaaggaactggcggtcgaggacaacggctgggtggtccgggtccgccccgaactcgtg
gtggagatcgcctacgacggtctccagcgctccacccgctacccggccggtgtcaccctc
cgcttcgcccgcgtggtccgctaccgcgaggacaagcggcccgaggaggccgataccgtg
gaggccctgttggcagcccacccggaggtctcgccgtga

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