Shinella sp. HZN7: shn_31130
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Entry
shn_31130 CDS
T04278
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
shn_31130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shz03400
]
shn_31130
Enzymes [BR:
shz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
shn_31130
DNA repair and recombination proteins [BR:
shz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
shn_31130
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANH08598
UniProt:
A0A1A9GDH8
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All DBs
Position
pShin-06:complement(39648..42284)
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AA seq
878 aa
AA seq
DB search
MADKLSTYKKKRDFKQTQEPSGSTAVKSSNRLRFIIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTISKGQYGGGTVMLWDRGYWEPEGNKSPEE
ALKKGDFKFVLHGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHHDEHAVEENGAAILDENM
TSVASGRKMEQIAGGKGRKPKPFMTASGDVEADAVWDTKHGLAADERKKKTRKDVATSTS
ADLPDFIPPQLCETLERPPAGDKWLHEIKFDGYRIQMRAANGDVTLKTRKGLDWTAKYPE
IAEAAASLPDCIIDGEICALDDNGAPDFAALQAALSERNTGNLVYFAFDLLFDGGEDLRD
KPLVDRKARLQELLTDATEDPHLRFVEHFETGGDAVLRSACKLSLEGIVSKQEDASYRSG
RTDTWAKSKCRAGHEVVIGGYAKTNGKFRSLLVGVNRGEHFVYVGRVGTGYGAKKVETLL
PKLKAAETEKSPFTGIGAPKKEREVVWLKPELVAEIEFAGWTADGLVRQAAFKGLREDKP
AAEVEADKPASPAKTETPEPAVAAKVKPARRKGAKAEVMGVLISNPDKPLWPDAGDGKPV
TKEELAHYHEAVGAWLIEHVKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKVFGD
KKPYLQVDRVEGLVAIAQIGGIELHPWNCEPGKPEVPGRLVFDLDPGPDVPFSAVVAAAR
EMRDRLDDLGLISFCKTTGGKGLHVVTPLAVNARKPLSWAEAKGFAHDVCQEMARDNPDL
YLIKMTKSLREGRIFLDYLRNDRMATAAAPLSPRARPGATVSMPLTWTQVKSDLDPKRFT
IRTVPGLLAKTSAWEDYCDGQRRLEQAIKRLGKHKAAA
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagctatcgacatacaagaagaagcgggatttcaagcagacgcaggagccg
agtggctcgacggccgtcaaatcctcgaaccggctgcgctttatcatccagaaacacgat
gccacgcgcctgcattacgatcttcgcctcgagttcgacggcgttttcaaatcctgggcg
gtgaccaagggaccatcgctcgatccccatgacaagcggctggcggtcgaggtcgaggat
cacccgctcgactatggcgacttcgaaggaacgatctcgaagggccaatatggtggcggc
acggtgatgctgtgggatcgcggctactgggagcctgaaggcaacaagtcccccgaagag
gctttgaagaagggtgacttcaagttcgtgctccatggcaagcgtctgcatggcagcttc
gtgctcgtgaggatgcgcaacgatcgcgatggcggtaagcggacaaactggctgctgatc
aagcaccacgacgagcacgccgtcgaggagaacggcgccgccatcctggacgagaacatg
acctcggtcgcctccggccggaagatggagcagatcgccggcggcaaggggcggaagccg
aaaccgttcatgacggccagcggcgacgtcgaggccgatgctgtctgggacaccaagcat
ggcctcgcggctgacgagcgtaaaaagaagacgcgcaaggacgtcgcgacatcgacgtca
gccgatctgcctgactttattcccccgcagctctgcgaaacgctcgaacgcccgcccgcc
ggcgacaagtggctgcatgagatcaagttcgacggctatcgaattcagatgcgggccgcg
aatggcgatgtgacgctcaaaacccgcaagggcttggattggaccgccaagtatccggag
atcgccgaggccgccgcatcacttccggattgcatcatcgacggcgagatctgcgcgctc
gacgataacggcgccccggacttcgcggccttgcaggcggcgctctcggagcgcaacacg
ggcaacctggtctatttcgcattcgaccttctgttcgatggaggggaagaccttcgcgat
aagcctttggtcgaccggaaagctcggctgcaggagctgcttactgatgcaaccgaggat
ccgcacttgcgctttgtcgagcatttcgagacgggcggcgacgcggttcttcgctccgcc
tgcaagctctcgctcgaaggcatcgtctcgaaacaggaggatgcgtcgtatcgttcgggt
cgtaccgacacttgggcgaaatcgaaatgccgcgcagggcacgaagtcgtcatcggcggt
tatgccaagacgaacggcaaattccgctcgctgctggtcggcgtcaatcgcggcgagcat
ttcgtctatgtcggccgcgtcggtacgggctatggcgccaagaaggtcgaaacgctcctg
cccaagctcaaagccgctgagacggagaaatcccctttcacggggataggcgcgccgaag
aaggagagggaggtcgtctggctcaaacccgagttggtcgccgagatcgaattcgccggc
tggaccgcggacggtttggttcgccaggccgcgttcaagggcctgcgggaggataagccg
gccgccgaggtcgaagccgataagcccgcctcgccggcaaagaccgagacaccagagccg
gccgtggccgcaaaggtgaagcccgcgcgccggaagggtgcaaaggcggaggtcatgggc
gtgctcatctccaatccggacaaacccttgtggccggacgcgggcgacggcaagcccgtg
accaaagaggagctggcccactatcacgaagctgtcggcgcctggctcatcgagcatgtg
aagggtcggccgtgttcgatcatccgcgcgccggatggcattggcggcgagcaattcttc
cagcggcacgccatgccgggcacttcgaacctgctggaactggtcaaggtctttggtgac
aagaagccctacctgcaggtcgatcgtgtcgaaggcctcgtcgccatcgcccagatcggc
ggcattgagttgcatccgtggaactgcgaaccggggaaacccgaagtgccgggtcggctg
gtattcgacctcgatcccggcccggacgtgccattctccgccgtggtcgccgccgcgcgc
gagatgcgcgaccgcctggacgatctcggccttatcagtttctgcaagaccacgggtggc
aaggggctgcatgttgtgacgccgcttgccgtcaatgcccgcaagccgctctcctgggcc
gaggccaagggcttcgcccacgatgtctgccaggagatggcgcgcgacaaccccgacctc
tatctcatcaagatgaccaagagcctgcgggaaggccgcatcttcctagactatctgcgc
aacgaccgaatggcgacggcggcggcacccctctcgccgcgagcgcggcccggcgccacc
gtgtcgatgccgctgacgtggacgcaggtcaaatccgacctcgatccgaagcggttcaca
atccgcactgtgccggggctgctggcgaagacgagtgcctgggaggattactgcgatggc
cagcgccggctggaacaggcgatcaagcgcctcggcaagcacaaggcggccgcatga
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