Scardovia inopinata: SCIP_1030
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Entry
SCIP_1030 CDS
T03977
Name
(GenBank) putative transcriptional regulator
KO
K10914
CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
Organism
sij
Scardovia inopinata
Pathway
sij02020
Two-component system
sij02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sij00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SCIP_1030
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SCIP_1030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sij03000
]
SCIP_1030
Transcription factors [BR:
sij03000
]
Prokaryotic type
Helix-turn-helix
CRP/FNR family
SCIP_1030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
HTH_Crp_2
MarR_2
Crp
GntR
HTH_3
HTH_24
TrmB
Sigma70_r4
HTH_IclR
HTH_29
YfeC-like
MarR
Xre-like-HTH
Sigma70_r4_2
HTH_11
Exo70_C
Motif
Other DBs
NCBI-ProteinID:
BAR07097
LinkDB
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Position
1301073..1301792
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AA seq
239 aa
AA seq
DB search
MIAPNQHRQIDPEAILLHTALFKHVKPSDADQLIPHLHQLEYAKGDFIFRERDTDTRMFI
LENGKVKLTRESHDGRIQLLSIHGPGEVLGEIPVFDPEGGPRTASAVAMKDETVTVSLSH
EALLKWLDDHPEVAVSMLQVLAHRMRRNNEKISDFVFMDVPGRLAKTLIDLARRFGQPTE
KGLLVPHDLTQEELAQLVGTSRETVNKALMDFTNRGWIARDGRTIIIYRPGKLILRSKH
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgattgcacccaatcagcatcgacagatagaccctgaagcaatactcctgcatactgcc
ttgttcaagcatgttaagccgtcagatgctgatcagttaattccccaccttcaccagctc
gagtatgcaaaaggagattttatcttccgcgagcgcgatactgatacccgcatgttcata
ttagaaaatggaaaggtgaaactgactcgggaatctcatgacgggcgtattcagctcctg
agcattcatggtccgggggaagttttgggagaaattccggtttttgatcctgagggaggg
ccacgaacagcctctgcagttgccatgaaagatgagacggtgaccgtttccctgtctcat
gaagccttgctgaaatggttggatgatcacccggaagtagcagtcagcatgcttcaggtt
ttggcccaccgtatgcgcagaaacaatgagaaaatcagcgatttcgtttttatggatgta
cccggccgactggccaagaccctgattgatcttgcccgtcgctttggtcagcccacagaa
aaaggcctattggtccctcatgatttaacccaggaagaactggcacagctggtaggaacg
tccagggaaacagtgaacaaggcgctgatggatttcaccaaccgagggtggattgccaga
gatggtcggacaataattatctatcgtccgggaaaactcattcttcgctctaagcattaa
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