Streptococcus iniae SF1: K710_0614
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Entry
K710_0614 CDS
T02686
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
sik
Streptococcus iniae SF1
Pathway
sik03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K710_0614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sik03019
]
K710_0614
03009 Ribosome biogenesis [BR:
sik03009
]
K710_0614
Enzymes [BR:
sik01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
K710_0614
Messenger RNA biogenesis [BR:
sik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K710_0614
Ribosome biogenesis [BR:
sik03009
]
Prokaryotic type
rRNA helicases
K710_0614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AGM98393
LinkDB
All DBs
Position
583566..585197
Genome browser
AA seq
543 aa
AA seq
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MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIRTDDNIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF
SATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMDVQQPE
LAIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILVATDVAA
RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKTGESITFVSPNEMGYLSMIETLTKK
QMLPLKPATAEEAFQAKKKIALKKIERDFADETIRSNFDKFKGDAIQLASEFTPEELALY
ILSLTVQDPDTLPEVEIAREKPLPFKYVGGGHGGGKKGKGGRGRDNRGRGGRDGDRRGGY
RGDRNRDDRDNDRRRNKRDKRDNHDASASGSRKPKRNAKEFYNKDKKSGNKKDSGFVIRH
KGE
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaattaaacttatcagaagacatccaatcagctgttgtaacagcaggt
tttgaaaaagcatctcctattcaggaaatgactattccattagctttggaaggtaaggat
gttattggtcaggctcaaacaggaactggtaaaacagctgcatttggtcttccaaccttg
aataagattcgcacggatgacaatatcatccaagcattagtgattgcaccaacgcgtgaa
ttagcggtacaaagtcaagaagaacttttccgttttggtcgtgataaaggtgttaaagtt
cgctctgtatatggcggatcaagtattgataaacaaattaaagcattgaaatccggtgct
catattgttgttggtacaccaggtcgtttactagaccttatcaaacgtaaagcattgaaa
ctagaacatgttgaaacattgattcttgatgaagctgatgaaatgttaaacatgggcttc
cttgaagatattgaagctattatcagtcgtgttcctgaagaacgtcaaacgctcctattt
tcagcaacaatgcctgctccaattaaacaaattggtgttaagttcatgaaaaatcctgaa
catgttcaaattaaaaacaaagaattaacaaatgttaatgttgaacaattctacgttcgt
gttaaagaacaagaaaaatttgacaccatgacacgtcttatggacgttcaacaaccagaa
cttgctattgtttttggtcgtacaaaacgtcgtgttgatgaaattacccgtggtcttaaa
ttacgtggtttccgtgcagaaggtattcatggagaccttgatcaaaacaaacgtttacgt
gttattcgtgattttaaaggggaccaaattgatattttagttgcaactgacgttgctgcg
cgtggacttgatatttcaggagttactcacgtttataactacgacatcactcaagatcca
gaaagttatgttcaccgtattggtcgtacgggtcgtgctggtaaaacaggtgagtctatt
acttttgtatcaccaaacgaaatgggttacttgtcaatgattgaaacattgactaaaaaa
caaatgcttccactgaaacctgcaacagcagaagaagcattccaagcgaaaaagaaaatt
gctcttaagaaaattgaacgtgactttgctgatgagactattcgttcaaactttgacaaa
ttcaaaggagatgcaattcaattagcttcagaatttacacctgaagaattagcgctttat
atcttgagtttaaccgttcaagatccagacaccctaccagaagttgaaattgcacgtgaa
aaaccattaccatttaaatatgttggtggtggtcatggcggtggcaaaaaaggtaaaggc
ggccgtggtagagataaccgtggacgtggtggccgtgatggtgaccgtcgtggtggttac
cgtggtgatcgtaaccgtgatgaccgtgataatgaccgtcgtcgcaacaaacgtgataaa
cgtgacaaccatgatgcaagtgctagtggtagccgcaaaccaaaacgtaatgcaaaagaa
ttttacaataaagacaaaaagtctggtaataaaaaggattcaggtttcgttattcgtcat
aaaggtgaataa
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