Ruegeria pomeroyi: SPO2509
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Entry
SPO2509 CDS
T00215
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SPO2509 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sil03400
]
SPO2509 (xth)
Enzymes [BR:
sil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
SPO2509 (xth)
DNA repair and recombination proteins [BR:
sil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
SPO2509 (xth)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
AAV95759
UniProt:
Q5LQI1
LinkDB
All DBs
Position
2656687..2657493
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AA seq
268 aa
AA seq
DB search
MKIATFNINGIKARAEALPAWLDSAQPDVALLQEIKSVDESFPREMFEERGYNVETHGQK
GFNGVAILSKLPLEDVSRGLPGDDSDEQARWIEATVVGKQALRLCGLYLPNGNPVELTES
GDPVPGGKYDYKLRWMERLQARATELMAAEEPALMAGDYNIIPQAEDAKRPEAWREDALF
RPESRAAFRRILNLGFTEAFRARVQGPGHYSFWDYQAGAWNRNDGIRIDHFLLTPQAADL
MRDCGIDKEVRGRDKPSDHVPVWVELDI
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcgccacgttcaacatcaacgggatcaaggcccgcgccgaggcgctgcctgca
tggctggacagcgcgcagcccgatgtggcgctgttgcaagaaatcaagtcggtggacgaa
agctttccccgcgagatgttcgaagaacgcggctataacgtggaaacccacgggcaaaag
gggttcaacggggtggcgatcctgtccaaactgccgctcgaggatgtctcgcgcgggttg
ccgggcgacgacagcgacgagcaggcgcgctggatcgaggccacggtggtgggcaaacag
gcgctgcgcctgtgcgggctgtacctgcccaatggcaatccggtggagctgaccgaaagc
ggcgatccggtgccgggcggcaaatacgactacaagctgcgctggatggagcggctgcaa
gcccgcgccaccgagctgatggcggccgaggaaccggcgctgatggcgggcgattacaac
atcatcccgcaggccgaggatgccaagcgccccgaggcctggcgcgaggacgcgctgttt
cgccccgaaagccgcgccgcctttcgccgtatcctgaacctgggatttaccgaagccttc
cgcgcgcgggtgcagggaccggggcattactcgttctgggactatcaggccggcgcctgg
aaccgcaatgacggtatccgcatcgaccatttcctgctgaccccgcaggccgccgacctg
atgcgcgattgcggcatcgacaaggaggtccgtggcagagacaagccctccgatcacgtg
ccggtctgggtcgagctggatatctga
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