KEGG   Simplicispira suum: C6571_07475Help
Entry
C6571_07475       CDS       T05361                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
simp  Simplicispira suum
Pathway
simp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:simp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C6571_07475 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:simp03400]
    C6571_07475 (ligD)
Enzymes [BR:simp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C6571_07475 (ligD)
DNA repair and recombination proteins [BR:simp03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C6571_07475 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AVO41146
LinkDB All DBs
Position
complement(1588967..1591555)
Genome map
AA seq 862 aa AA seqDB search
MASRNPPEDALTRYREKRNFTRTPEPEGAVEPAAGALRFVIHKHWATRLHYDLRLECEGT
MKSWAVPKGPSLDPREKRMAVQVEDHPISYNSFEGQIPPGQYGAGRVVLWERGHWIPHSD
PVAGLRDGHLKFTLQGEKLHGSWALVRMGGKRFDPKKPAWLLIKERDAEARPADEYDVTE
ALPDSVNTGAAAKAQPAPKAAKQAPSQPERKSTAKISTQSAALGSPLKALPQTLAPQLAT
LANAPPSDGVGWIYELKFDGYRMLARIDARGAVRLFTRSGNDWTDKLASIADAIKALGLR
STWLDGELTATGDNGAPDFQRLQNAFDRAATTDLIYTLFDLPVYAGRDLREEPLLERRAA
LEALVQKDAGETLRFSAAFDARASDLVASACKIGFEGVIGKRADAPYRSGRSSQWIKLKC
SQRQEFVVGGFTEPQGGRSGLGALLLGVHDGKGALLYAGKVGTGFTDDALQRLRAQLEPL
VQKRCPFSAQPADARKAHWLKPTLVAEVAFAEWTQDGRIRHSVFKGLRTDKPAHSIVREQ
ATRPAATTAAQPKGKRPVGAKAPSPALPSSFSITHGERVIDAASGTTKRDLARYYATVAP
LMLEHLAGRPVALVRAPQGVGKETFFQKHGDAERLPGIEALDPQLDPGHGPLLEVVSAVG
LLSAAQMNVIEFHTWNARADRIERPDRITFDLDPGEGVAWPQIQEAAELVRVLLRELGLP
AFLKTSGGKGLHVVVPLKRLRDWDSTKDFSQAVVQHLARAIPQRFVGKSGPRNRVGKIFV
DYLRNGRGATTVSAWSARARPGLGVSVPVAWSELPSIASGAHWTVATIEDRLRLGNGPWT
GYDKAASALGEAMARLDFTPSA
NT seq 2589 nt NT seq  +upstreamnt  +downstreamnt
atggccagccgaaatccgcctgaagacgcactgacgcgctaccgggaaaagcgcaatttc
acgcgaacgcccgagcccgaaggggcggtggaacccgccgccggagcgctgcgctttgtc
atccacaagcactgggccacgcggctgcactacgacttgcgcctggaatgcgagggcacg
atgaaaagctgggccgtgcccaaaggccccagcctggatccgcgcgagaaacgcatggcc
gtgcaggtggaagaccaccctatcagctacaacagctttgaaggccagattccgccaggc
cagtacggcgcgggccgcgtcgtgctgtgggagcgcggccactggattccccacagcgac
cccgtcgccgggctgcgcgacgggcatctgaagttcacgctgcaaggcgaaaaactgcac
ggcagctgggcactggtgcgcatgggcggaaagcgttttgacccgaaaaagcccgcctgg
ctgctcatcaaagagcgggatgctgaggcgcggccggcggacgagtacgacgtgaccgaa
gcactgcccgacagcgtgaacactggtgcagcggcaaaggcccaacccgcgcccaaggcg
gccaagcaagcgcccagccagccagagcgcaagagcaccgcaaaaatatcaacccaatct
gcagcactcggaagcccactcaaggcgcttccccagacgctggcgccgcaactggccacg
ctcgccaacgcgccgccatcggatggcgtgggctggatttacgagctgaaatttgacggc
taccgcatgcttgctcgcatcgacgcgcgcggcgccgtgcgcttgttcacccgcagcggc
aacgactggaccgacaaactcgcctccatcgccgacgccatcaaggccttgggcctgcgc
tccacttggctcgacggcgagctcaccgctaccggcgacaacggagcgccggactttcag
cgcctgcaaaacgcttttgatcgcgcggccaccaccgaccttatctacaccctgtttgac
ctgccggtgtacgcggggcgtgacctgcgtgaagaaccgctgctggagcgccgcgcagcg
ctggaagcgctcgtgcaaaaagacgctggcgagaccctgcggttcagcgcagcgtttgac
gcccgcgcctcagacctcgttgcatccgcctgcaagattggctttgaaggcgtcatcggc
aagcgcgccgatgcgccttatcggagcggccgcagcagccaatggatcaagctcaaatgc
agccagcggcaagagtttgtcgtcggcggtttcaccgaaccgcaaggggggcgcagtggc
ctgggcgccttgctgcttggtgtgcacgatggcaaaggcgcgttgctgtatgccggcaag
gtaggtaccggctttaccgacgacgcgctccaacgtctgcgcgcgcagctcgagcctttg
gtgcagaagcgctgtccgttttcggcccagcctgcggacgcacgcaaggcgcattggctc
aagcccactctggtggccgaagtggccttcgctgagtggacacaagacggccgcatccgc
cactcggttttcaaaggcttgcgcaccgacaagccggcccacagcatcgtgcgcgagcag
gccactcggccggccgccacaacggcagcgcagcccaaaggcaaacgtccggtcggcgcc
aaggcaccgtcgccggcattgccatcgagtttcagcatcacccatggcgagcgcgtgatt
gacgcggccagcggcactaccaaacgggacctggcgcgctactacgccacggtggcgccg
ctgatgcttgagcacttggcgggccgcccggtggccctggtgcgcgcgccccaaggggtg
ggcaaggaaactttctttcagaagcacggggacgccgagcgcctgcccggcatcgaagcg
ctcgacccccaactcgacccgggccacggcccgctgctggaagttgtctcagccgtgggg
ctgctgtcggcggcgcaaatgaacgtcattgagtttcacacctggaacgcccgtgcagac
cgcatcgagcggcccgaccgcatcaccttcgacctggacccgggcgagggcgtggcctgg
ccgcaaattcaagaagcggccgaactggtgcgcgtgctgctgcgcgaactgggcttgccg
gcctttctgaaaaccagtggcggcaagggcttacacgtggtcgtcccgctcaagcgcctg
cgcgattgggacagcaccaaggatttttcgcaagccgtggtgcagcacctggcgcgcgcc
attccgcagcgcttcgtcggcaaaagcggcccgcgcaatcgcgtcggcaaaatttttgtc
gactacctgcgcaacggccgcggcgccaccaccgtgtcggcctggtctgcccgtgcccgg
cccgggctgggcgtatcggttccggtggcgtggtccgaattgccctcgattgccagtggc
gcgcactggacggtagccaccatcgaagaccggctgcgcctgggcaacgggccctggacc
ggttacgacaaagcggcgtcggcgttgggcgaagccatggcgcgcctcgacttcacgcca
tcggcctga

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