KEGG   Sulfolobus islandicus Y.N.15.51: YN1551_0851Help
Entry
YN1551_0851       CDS       T00902                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sin  Sulfolobus islandicus Y.N.15.51
Pathway
sin03030  DNA replication
sin03410  Base excision repair
sin03420  Nucleotide excision repair
sin03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    YN1551_0851
   03410 Base excision repair
    YN1551_0851
   03420 Nucleotide excision repair
    YN1551_0851
   03430 Mismatch repair
    YN1551_0851
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sin03032]
    YN1551_0851
   03400 DNA repair and recombination proteins [BR:sin03400]
    YN1551_0851
Enzymes [BR:sin01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     YN1551_0851
    6.5.1.6  DNA ligase (ATP or NAD+)
     YN1551_0851
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     YN1551_0851
DNA replication proteins [BR:sin03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    YN1551_0851
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     YN1551_0851
DNA repair and recombination proteins [BR:sin03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     YN1551_0851
   NER (nucleotide excision repair)
    Other NER factors
     YN1551_0851
   MMR (mismatch excision repair)
    Other MMR factors
     YN1551_0851
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ACP47973
UniProt: C3NF77
LinkDB All DBs
Position
complement(770111..771916)
Genome map
AA seq 601 aa AA seqDB search
MEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKAIIDKVVYIIQGKLWPDFLGYPELG
IGEKFLIKAISIATNTDENSVENLYKSIGDLGEVARRLKSKQQSTGILGFLGTSSKESLK
VDKVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVL
DAMAIAFGGGQSASEIVERAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLAER
LSNPEEILKKVGGSALVDYKYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYISKYT
EGKEFIIEGEIVAVDPESGEIRSFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDY
TTKPLEVRRKLLESIVKPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDA
IYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFE
SVCKVASGFSDEQLDELQKKLMEIKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISP
LHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQPKKKIESPPIDES
V
NT seq 1806 nt NT seq  +upstreamnt  +downstreamnt
atggagtttaaagttattgccgaatactttgataaattagagaagatatcttcaaggctc
cagcttacagctttactggctgatcttttaagcaaaagtgataaggcaattatagataag
gtagtttatattatacaaggcaaattatggcctgattttctaggttatccagagcttgga
attggagagaaattcttaataaaagcaattagtatagctacgaacacagatgaaaattca
gtagaaaatctctataagtcaataggtgatcttggagaagtagctcgaaggttgaaaagt
aagcaacaaagtacaggaattttaggttttttgggtacatcaagtaaagagagcttaaaa
gtggataaagtttactctacgttatctaaggtggcattaactacgggagagggtagtaga
gatttaaagataagattactggcaggattgttaaaaaaggcagatccgttagaggccaag
ttcctagttaggtttgttgaaggtcgacttagagttggtataggagatgcgacagtttta
gatgctatggcaatagcttttggcggggggcaatcagcatcagaaatagttgaaagagct
tataatcttagggcggatctaggaaacattgcaaaaattatagtagagaagggaattgaa
gccttaaagactctaaaacctgaagttggaataccaattagaccgatgctagctgaaagg
ttatcaaatcctgaagaaatattaaagaaagtaggtggaagtgcattagtcgattataaa
tacgatggagagagggcccaaatacacaaaaaagatgacaaaatttttatattttctcga
agattagagaacattacttctcagtatccagatgtagtagagtatattagtaaatacact
gaaggcaaagagttcattatagaaggagaaatagtggctgtagatccagaaagcggtgag
ataagatcatttcaagaattaatgcacagaaagaggaagtcagatatttacgaagcaatt
aaagagtacccagtaaacgtatttctctttgatttaatgtattatgaagatgtagattat
actacaaagccattagaagttaggagaaaattgttagaaagtattgtaaaaccaaacgac
tatgtaaaaatagctcatcatattcaagttaataatgtagaggatcttaaatcgttcttc
tatcgagcaatatctgagggtggagagggagtaatggtgaaggcaattggaaaagatgca
atatatcaagctggtgctaggggttggttatggataaagcttaaacgtgattatcaaagc
gagatggctgatacagtagacttagtagttgttggtggtttctatgggaagggtaaaaga
ggcggcaagataagctcactattaatggccgcatataatcctaagactgatactttcgaa
tctgtttgcaaggtggctagtggcttctcagatgagcaacttgatgagttacagaagaag
ttaatggaaataaagagggatataaaacatcctagagttaattctaagatggaaccagat
atatgggtagagccagtttatgtagcggaaataattggagcggagataacaatatctcct
ttacatacttgttgtcaagacgtcgtagagaaggatgctggtttatctataagatttcct
cgatttataagatggagagatgataaaagtccagaagatgctacaaccactgatgagata
cttgaaatgtacaacaagcagcctaagaagaagatcgaatcaccacctatagacgagagc
gtttaa

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