Sphingobium indicum B90A: SIDU_03900
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Entry
SIDU_03900 CDS
T04604
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sinb
Sphingobium indicum B90A
Pathway
sinb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SIDU_03900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinb03019
]
SIDU_03900
03016 Transfer RNA biogenesis [BR:
sinb03016
]
SIDU_03900
Enzymes [BR:
sinb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SIDU_03900
Messenger RNA biogenesis [BR:
sinb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SIDU_03900
Transfer RNA biogenesis [BR:
sinb03016
]
Prokaryotic type
tRNA degradation factors
SIDU_03900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
APL93725
UniProt:
A0A1L5BLE0
LinkDB
All DBs
Position
complement(803575..805938)
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AA seq
787 aa
AA seq
DB search
MASTEKKKKTDSARTKVRPAGFPTREQVMDFIATSDQPAGKREIAKAFGLKGQEKIALKA
LLKDMADEGLIDIGPARAFHKMGGVPKVTVLRIVDVDDTTLIATPERWEAEGQPAPRLRI
VERGKRGALTIGDRILARTEEAGRGWVAHPMKKLAKASEELLGVVEEGDGGKLWLRPVDK
RIRRDTPISDAGAAKKGDLVLAEPVGRPPRITARVTDILGDPFAPRSFSLIAIHKHGIPH
VFSERVEEEAVAASSLALHEEKREDLRHLPIVAIDPVDARDHDDAVWAAPDDDPANSGGY
KAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGEDRAAM
ACHLVLDASGKVKSWRFSRAVIRVVAVLAYEDAQAAIDGTLDMGADDAPAHPPTPSRLRA
GELLETALRPLWACWALLRKARDKREPLALDLPERRVVLDDYGKIVSVAVRERLDAHMLI
EDYMIAANVAAAKALEAKKAPVMYRVHEPPSRDKLVALKDYLATFGIEFALGQVVRPATF
NRLIERVGEAEEKPQIMEQILRSQTQAYYAPSNLGHFGLALGSYAHFTSPIRRYADLLVH
RALVGAYGLELPAPKGDIPDRSSLSGEDMENMGRVGEMISQHERRAMEAERETTDRYVAA
FLAAHVGDLVEARITGVQSFGFFATVEGLGGDGLVPVSTLGDERFFFDEAGRALEGVESG
DRYTVGQRLALRLAEADPINGSLRFELPDAPPQRPSFKKDRVRPGSARRGRPGNVRHIGS
KRGKHRR
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaccgaaaagaagaagaaaaccgactccgcacggaccaaggttcggcccgcg
ggctttccgacgcgcgagcaggtgatggatttcatcgccacgtccgaccagccggccgga
aagcgggagatcgcaaaggccttcggcctcaaggggcaggagaagatcgcgctcaaggcg
ctgctcaaggacatggcggacgaagggctgatcgacatcggcccggcgcgggccttccac
aagatgggcggcgtgcccaaggtcacggtgctgcggatcgtcgatgtcgacgacaccacc
ctgatcgccacgcccgaacgctgggaggcggagggacagcccgcaccccggctgcgcatc
gtggagcggggaaagcgcggcgcgctgaccataggcgaccgcatcctggcgcggacggag
gaagccgggcgcggctgggtcgcgcatccgatgaagaaactcgccaaggccagcgaggaa
ttgctgggcgtggtggaggaaggcgacggcggcaagctgtggctgcgccccgtcgacaag
cgcatccgccgggacacgccgatttcggacgccggcgcggcgaagaagggcgacctggtg
ctggccgagccggtggggcgcccgccccggatcacggcgcgggtcacggacatattgggt
gatcccttcgcgccacgcagcttcagcctgatcgccatccacaagcatggcattccccat
gtcttttccgagcgggtcgaggaagaggcagtggcagcttccagcctggccctgcatgag
gaaaagcgggaggatttgcggcatttgcccatcgtcgccatcgatccggtcgatgcgcgg
gaccatgacgatgcggtctgggccgcgccggacgacgatccggccaattcaggcggctac
aaggcgatcgtcgcgatcgcggacgtcagctattatgtgcggccgggcagcgcgctggac
cgggaagcgaggaagcgcgggaacagcgtctattttcccgatctcgtggtgccgatgctg
ccgcaccagctttcgtccgacatgtgttcgttgcgggcgggcgaggatcgggcggcgatg
gcctgtcaccttgtccttgacgcttcgggcaaggtgaagagctggcgcttctcccgcgcg
gtgatccgggtggtggcggtgctggcctatgaggatgcgcaggcggcgattgatgggacg
ttggatatgggggcggatgacgcgccagcccaccccccgaccccctcccgcctgcgggcg
ggggagttgctggagacggcgctgaggccgctttgggcctgttgggcgttgctgcgcaag
gcgcgggacaagcgggagccgctggcgctggacttgccggagcggcgggtggtgctggac
gactatggcaagatcgtcagcgtcgcggtgcgcgagcggctcgacgcgcatatgctgatc
gaggattatatgatcgccgccaatgtcgcggcggccaaggcgctggaggccaagaaggcg
ccggtcatgtaccgcgtccatgaaccgccgagccgggacaagctggtcgcgttgaaggac
tatctggcgaccttcggcatcgaattcgccctggggcaggtggtgaggcctgcgaccttc
aaccggctgatcgaacgggtcggggaagcggaggaaaagccccagatcatggagcagatc
ctgcgcagccagacccaggcctattatgcgccgtccaatctgggccatttcgggctggcc
ttgggttcctatgcccatttcacctcgccgatccggcgctatgccgacctgctggtgcac
cgggcgctggtgggcgcctatgggctggaactgcccgcgcccaagggggacattcccgac
cggtcttcgctgagcggcgaggatatggagaatatgggccgcgtgggcgaaatgatcagc
cagcatgagcgccgcgccatggaggcggagcgggagaccaccgaccgctatgtcgcggcc
ttcctggcggcgcatgtcggcgatctggtggaggcgcggatcaccggcgtgcagagcttc
ggcttcttcgccacggtggagggactgggcggcgacgggctggtgccggtgtcgacgctg
ggcgacgagcgtttcttcttcgacgaagccgggcgggcgctggagggcgtggagagcggg
gatcgctatacggtcgggcagcggctggcattgcggctggcggaggcggatccgatcaac
ggatcgctgcgcttcgaactgcccgacgccccgccccagcggccgagcttcaagaaggac
cgggtgcgccccggcagcgcccggcgcgggcggcccggcaatgtccggcacatcggatcg
aaaaggggcaagcatcggcggtaa
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