KEGG   Sphingobium indicum B90A: SIDU_03900
Entry
SIDU_03900        CDS       T04604                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
sinb  Sphingobium indicum B90A
Pathway
sinb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sinb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SIDU_03900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sinb03019]
    SIDU_03900
   03016 Transfer RNA biogenesis [BR:sinb03016]
    SIDU_03900
Enzymes [BR:sinb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     SIDU_03900
Messenger RNA biogenesis [BR:sinb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SIDU_03900
Transfer RNA biogenesis [BR:sinb03016]
 Prokaryotic type
  tRNA degradation factors
   SIDU_03900
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1 HTH_12
Other DBs
NCBI-ProteinID: APL93725
UniProt: A0A1L5BLE0
LinkDB
Position
complement(803575..805938)
AA seq 787 aa
MASTEKKKKTDSARTKVRPAGFPTREQVMDFIATSDQPAGKREIAKAFGLKGQEKIALKA
LLKDMADEGLIDIGPARAFHKMGGVPKVTVLRIVDVDDTTLIATPERWEAEGQPAPRLRI
VERGKRGALTIGDRILARTEEAGRGWVAHPMKKLAKASEELLGVVEEGDGGKLWLRPVDK
RIRRDTPISDAGAAKKGDLVLAEPVGRPPRITARVTDILGDPFAPRSFSLIAIHKHGIPH
VFSERVEEEAVAASSLALHEEKREDLRHLPIVAIDPVDARDHDDAVWAAPDDDPANSGGY
KAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGEDRAAM
ACHLVLDASGKVKSWRFSRAVIRVVAVLAYEDAQAAIDGTLDMGADDAPAHPPTPSRLRA
GELLETALRPLWACWALLRKARDKREPLALDLPERRVVLDDYGKIVSVAVRERLDAHMLI
EDYMIAANVAAAKALEAKKAPVMYRVHEPPSRDKLVALKDYLATFGIEFALGQVVRPATF
NRLIERVGEAEEKPQIMEQILRSQTQAYYAPSNLGHFGLALGSYAHFTSPIRRYADLLVH
RALVGAYGLELPAPKGDIPDRSSLSGEDMENMGRVGEMISQHERRAMEAERETTDRYVAA
FLAAHVGDLVEARITGVQSFGFFATVEGLGGDGLVPVSTLGDERFFFDEAGRALEGVESG
DRYTVGQRLALRLAEADPINGSLRFELPDAPPQRPSFKKDRVRPGSARRGRPGNVRHIGS
KRGKHRR
NT seq 2364 nt   +upstreamnt  +downstreamnt
atggcatccaccgaaaagaagaagaaaaccgactccgcacggaccaaggttcggcccgcg
ggctttccgacgcgcgagcaggtgatggatttcatcgccacgtccgaccagccggccgga
aagcgggagatcgcaaaggccttcggcctcaaggggcaggagaagatcgcgctcaaggcg
ctgctcaaggacatggcggacgaagggctgatcgacatcggcccggcgcgggccttccac
aagatgggcggcgtgcccaaggtcacggtgctgcggatcgtcgatgtcgacgacaccacc
ctgatcgccacgcccgaacgctgggaggcggagggacagcccgcaccccggctgcgcatc
gtggagcggggaaagcgcggcgcgctgaccataggcgaccgcatcctggcgcggacggag
gaagccgggcgcggctgggtcgcgcatccgatgaagaaactcgccaaggccagcgaggaa
ttgctgggcgtggtggaggaaggcgacggcggcaagctgtggctgcgccccgtcgacaag
cgcatccgccgggacacgccgatttcggacgccggcgcggcgaagaagggcgacctggtg
ctggccgagccggtggggcgcccgccccggatcacggcgcgggtcacggacatattgggt
gatcccttcgcgccacgcagcttcagcctgatcgccatccacaagcatggcattccccat
gtcttttccgagcgggtcgaggaagaggcagtggcagcttccagcctggccctgcatgag
gaaaagcgggaggatttgcggcatttgcccatcgtcgccatcgatccggtcgatgcgcgg
gaccatgacgatgcggtctgggccgcgccggacgacgatccggccaattcaggcggctac
aaggcgatcgtcgcgatcgcggacgtcagctattatgtgcggccgggcagcgcgctggac
cgggaagcgaggaagcgcgggaacagcgtctattttcccgatctcgtggtgccgatgctg
ccgcaccagctttcgtccgacatgtgttcgttgcgggcgggcgaggatcgggcggcgatg
gcctgtcaccttgtccttgacgcttcgggcaaggtgaagagctggcgcttctcccgcgcg
gtgatccgggtggtggcggtgctggcctatgaggatgcgcaggcggcgattgatgggacg
ttggatatgggggcggatgacgcgccagcccaccccccgaccccctcccgcctgcgggcg
ggggagttgctggagacggcgctgaggccgctttgggcctgttgggcgttgctgcgcaag
gcgcgggacaagcgggagccgctggcgctggacttgccggagcggcgggtggtgctggac
gactatggcaagatcgtcagcgtcgcggtgcgcgagcggctcgacgcgcatatgctgatc
gaggattatatgatcgccgccaatgtcgcggcggccaaggcgctggaggccaagaaggcg
ccggtcatgtaccgcgtccatgaaccgccgagccgggacaagctggtcgcgttgaaggac
tatctggcgaccttcggcatcgaattcgccctggggcaggtggtgaggcctgcgaccttc
aaccggctgatcgaacgggtcggggaagcggaggaaaagccccagatcatggagcagatc
ctgcgcagccagacccaggcctattatgcgccgtccaatctgggccatttcgggctggcc
ttgggttcctatgcccatttcacctcgccgatccggcgctatgccgacctgctggtgcac
cgggcgctggtgggcgcctatgggctggaactgcccgcgcccaagggggacattcccgac
cggtcttcgctgagcggcgaggatatggagaatatgggccgcgtgggcgaaatgatcagc
cagcatgagcgccgcgccatggaggcggagcgggagaccaccgaccgctatgtcgcggcc
ttcctggcggcgcatgtcggcgatctggtggaggcgcggatcaccggcgtgcagagcttc
ggcttcttcgccacggtggagggactgggcggcgacgggctggtgccggtgtcgacgctg
ggcgacgagcgtttcttcttcgacgaagccgggcgggcgctggagggcgtggagagcggg
gatcgctatacggtcgggcagcggctggcattgcggctggcggaggcggatccgatcaac
ggatcgctgcgcttcgaactgcccgacgccccgccccagcggccgagcttcaagaaggac
cgggtgcgccccggcagcgcccggcgcgggcggcccggcaatgtccggcacatcggatcg
aaaaggggcaagcatcggcggtaa

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