Sphingobium indicum B90A: SIDU_13045
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Entry
SIDU_13045 CDS
T04604
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sinb
Sphingobium indicum B90A
Pathway
sinb03410
Base excision repair
sinb03430
Mismatch repair
sinb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sinb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SIDU_13045
03430 Mismatch repair
SIDU_13045
03440 Homologous recombination
SIDU_13045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinb03400
]
SIDU_13045
DNA repair and recombination proteins [BR:
sinb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SIDU_13045
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SIDU_13045
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SIDU_13045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
APL95363
UniProt:
A0A1L5BR56
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All DBs
Position
complement(2734074..2735840)
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AA seq
588 aa
AA seq
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MTIALNVTRSILGQPWRWRGGSADGRDPGYRPDDLVTQLLLARGCPRDAVEAHRNPTIRH
FMPDPSLFRDMDAAAERLADAVARGEDVRIFGDYDVDGATSAALLIRLLRDLGLAARPYI
PDRLMEGYGPSGEALVRLAGEGATLIVTVDCGAQAFDALAQAKAAGVDVVVVDHHKCAAA
LPEALALVNPNRLDEGEEAAAHGHLAAVGVAFLLGAALIRALRKRNWFAQRTEPPLMDLL
DIVALGTVADVAQLKGLNRAFVAQGLKVMAKRRNIGLSALIDASRLTRAPLCHDLGFALG
PRINAGGRVGKADLGVRLLTTDDPAEAAQIAQELDLLNEERRTIEAAVQAEAEELLAAQG
NRAVALLSGAGWHPGVIGIVAGRIKEKAGRPAIVVAIDGDGTGKGSGRSISGVDLGAAVL
AAKDSGLLVAGGGHAMAAGLTVAADKVDALADFLDERLSGAVAKARDDRALLIDAVLAPA
GVNPDFVAAIDAGGPYGAGWPAPLIASGPMRVIKADVVGNGHLRAIMAGDDGRSIKTIAF
RQAESDLGQAILGAPRDRRLWIAGRAKIDDWGPRPAAELHLEDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcgcgctcaacgtcacccgttcgatcctcggccagccctggcggtggcgcggg
ggcagcgcggacgggcgcgatccgggctatcggcctgacgatctggtgacgcaactgctg
ctggcgcggggctgcccccgcgacgcggtggaggcgcaccgcaatcccaccatccgccat
ttcatgcccgatcccagcctgttccgcgacatggacgccgccgccgaacggctggccgac
gcggtggcgcggggggaggatgtgcgcatcttcggcgactatgacgtggacggcgcgacc
agcgcggcgctgctgatccgtctgctgcgcgacctggggctggcggcccggccctatatc
cccgaccggctgatggagggctatggcccgtcgggcgaagcgctggtgcggctggcgggc
gagggcgcgaccctgatcgtcacggtcgattgcggcgcgcaggcgttcgacgcgctggcg
caggccaaggcggcgggcgtcgatgtggtggtggtcgaccatcataaatgcgccgccgct
ttgcccgaagcgctggcgctggtgaatcccaatcgcctggatgagggggaggaagccgcc
gcccacggtcatctggcggcggtgggcgtcgccttcctgctgggcgcggcgctgatccgg
gcgctgcgcaaacgcaactggttcgcgcaacggacggagccgccgctgatggacctgctc
gacatcgtcgcgctgggcaccgtggcggacgtggcccagttgaaggggctgaaccgcgcc
ttcgtggcgcaggggctgaaggtcatggcgaagcgccgcaatatcggcctttccgccctg
atcgacgccagccgcctgacgcgggcgccgctctgccacgacctgggcttcgcgctgggc
ccgcgcatcaatgcgggcgggcgcgtggggaaggcggacctgggcgtgcggctgctcacc
accgacgacccggcggaggccgcgcagatcgcgcaggaactcgacctgctgaacgaggaa
cgccggaccatcgaagcggccgtccaggcggaggcggaggaactgctggccgcgcagggc
aaccgggcggtggcgctgctgtccggcgcgggctggcatccgggcgtgatcggcatcgtc
gcggggcgcatcaaggagaaggcgggccgccccgccatcgtcgtcgccatcgatggggac
ggcaccggcaaggggtcgggccgctccatttccggcgtcgatctgggcgcggcggtgctg
gcggcgaaggatagcggcctgcttgtcgcgggcggcggccatgccatggcggcgggtctg
acggtcgcggcggacaaggtcgatgcgctggccgacttcctggacgagcggctttccggc
gccgtcgcgaaggcgcgggacgaccgcgccctgctgatcgacgcggtgctggcgcctgct
ggggtcaatccggatttcgtcgccgccatcgacgccggcggcccctatggcgcgggctgg
cccgcgccgctgatcgcttccgggccgatgcgggtcatcaaggcggacgtggtgggcaac
ggccatttgcgcgccatcatggcgggcgatgacggccggtcgatcaagaccatcgccttc
cgccaggcggaatccgacctgggccaggccatattgggggcgccccgcgaccggcggctg
tggatcgcgggccgggcgaagatcgacgattggggtccgcgccccgccgccgaactgcat
ctggaggacgccgcctgggccgattga
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