Sesamum indicum (sesame): 105170644
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Entry
105170644 CDS
T04135
Name
(RefSeq) THO complex subunit 4A
KO
K12881
THO complex subunit 4
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03013
Nucleocytoplasmic transport
sind03015
mRNA surveillance pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105170644
09122 Translation
03013 Nucleocytoplasmic transport
105170644
03015 mRNA surveillance pathway
105170644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105170644
03041 Spliceosome [BR:
sind03041
]
105170644
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105170644
TREX complex
105170644
Spliceosome [BR:
sind03041
]
Complex C
Other components
EJC/TREX
105170644
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105170644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Btz
RRM_3
Motif
Other DBs
NCBI-GeneID:
105170644
NCBI-ProteinID:
XP_011089799
UniProt:
A0A6I9TXI9
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Position
LG9:4752640..4756478
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AA seq
231 aa
AA seq
DB search
MAGAALDMTLDDLIKSNKKPAARGRGRGAGPGPARRQPNRSANRAAPYAPPKAPESAWGH
DMFAAGGRASSIETGTKLYISNLDYGVSNEDIKELFAEVGDLKRYHIHYDRSGRSKGTAE
VVFSRRQDALAAVKRYNNVQLDGKPMKIELVGTNVSTSGAVLPPAAPFADPSVALRSGGQ
GRGGFGRPRGGGRGRGFGRGRGRGRGREEKVSAEDLDADLEKYHADAMQTN
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgcagcactggatatgactcttgacgatctaatcaagagcaacaaaaaaccc
gccgcccggggtagaggacgcggcgctggtcctggccctgcacgccgccagcctaaccgc
tccgccaatcgcgccgctccttacgcccctcccaaggcgcctgaatcagcttggggtcat
gatatgttcgccgccggcggtcgagcttctagtatcgagactggaacgaagttgtacata
tccaatttagattatggggtctctaatgaggatattaaggaactgtttgcggaggttggt
gacctgaagaggtatcatatacactatgacaggagtggccgatcaaagggtactgctgaa
gtagtcttctcacggcgtcaagatgcactagccgccgttaagaggtataataatgttcag
cttgatgggaaaccaatgaaaatagagcttgttggaacaaatgtctcaacctctggtgcc
gttcttccgcctgctgccccttttgctgatccaagtgtagctctaagaagtggcggacaa
gggagaggtggttttgggagaccacgtggtggcggacgaggtcgtggatttggaagaggc
cgtggacggggaaggggccgtgaggagaaggtatctgccgaggatctagatgctgattta
gagaagtatcatgcagatgcgatgcagacaaattaa
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