KEGG   Sesamum indicum (sesame): 105170756Help
Entry
105170756         CDS       T04135                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sind  Sesamum indicum (sesame)
Pathway
sind03030  DNA replication
sind03410  Base excision repair
sind03420  Nucleotide excision repair
sind03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sind00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105170756
   03410 Base excision repair
    105170756
   03420 Nucleotide excision repair
    105170756
   03430 Mismatch repair
    105170756
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sind03032]
    105170756
   03400 DNA repair and recombination proteins [BR:sind03400]
    105170756
Enzymes [BR:sind01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     105170756
    6.5.1.6  DNA ligase (ATP or NAD+)
     105170756
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     105170756
DNA replication proteins [BR:sind03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    105170756
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     105170756
DNA repair and recombination proteins [BR:sind03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     105170756
   NER (nucleotide excision repair)
    Other NER factors
     105170756
   MMR (mismatch excision repair)
    Other MMR factors
     105170756
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 105170756
NCBI-ProteinID: XP_011089962
LinkDB All DBs
Position
LG9
AA seq 841 aa AA seqDB search
MFSLRSCSHRSVLVSLSLNLAGKLPFSPSVSFSLKPSFLFVSSIPSLRTMSTSRPSAFDI
LMSNASKKKKNASQSQPPKSQDSSPRKRKSPVEISQTPNLNPTDNSQNKVSNPIENAAGE
DQESAKNSTLDQIGDAHVDSSLKNSSDGTRSTIPAEEARLPGGTKKLKDSISKQTGSKRA
DPNNGPVVAKKPRLSITPEESLAELKKKAANFNVKKAAYWGEGERVPFIFVVKALDAISK
ESGRIAITEIVCNMLRTVIETTPDDLLAVVYLLANRIASAHDGLELGIGDASIIKALAEA
CGTKEAHVKKQYKELGDLGLVAKASRSSQPLMRKPEALTVAKVFDTFRLIAKESGKDSQE
KKKNHIKALLVAASDCEPQYLIRLLQTKLRIGLAEQTLLAALGHAAVYSEKHSSPPAKVD
NPLEEAAKIVKQVYSVIPVYDKIVPALLSGGVWNLPKTCSFSPGIPVGPMLAKPTKGVSE
IVEKFQDMEFTCEYKYDGERAQIHFMENGSVEIYSRNAERNTGKFPDVVVAVTRLKKPSV
TSFVLDCELVAYDREKQKIQPFQVLSTRARKNVLMNEIKVNVCIYAFDILYLNGQELLQE
QLNVRREHLYNSFQEEHGFLQFATAITSNDLEEIQKFLDDAVNSSCEGLIIKTLKKDATY
EPSKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSDKEEFQSI
CKIGTGFSEAMLEERSASLRSKVIPKPKSYYRYSDTISPDVWFEPTEVWEVKAADLTISP
VHRAAVGIVDPDKGISLRFPRLLRVREDKNPEEASSSDMVADMYNAQKHNNKDTKDENEE
D
NT seq 2526 nt NT seq  +upstreamnt  +downstreamnt
atgttttcactccggtcatgcagccaccgctcggtcctcgtctcgctctctcttaatctc
gccggaaaactccccttttctccctctgtttcattctctttaaaaccctcgtttcttttc
gtaagctcaatccctagcctgagaacaatgtccacctctcggccctcggcctttgatatt
ctcatgtccaatgcgtccaagaaaaagaaaaacgcgtctcagtcccaaccgccaaagtca
caggactcctcacccaggaaacgcaaatcccctgttgaaatttcccaaacccctaattta
aaccctacagataattcccaaaataaagtttccaacccaattgagaatgccgcaggagaa
gatcaagaaagcgccaaaaactcgactttagaccaaattggtgatgcccatgtggatagt
tcattgaaaaatagtagtgatggcacccgtagtaccatccctgctgaagaagcccgtctg
ccaggaggcacaaaaaaactgaaagattcgatttcaaaacaaactgggtctaaacgtgct
gatccgaataatggcccggtggtggctaagaagcccaggctgtcaatcactccggaggag
agtctagcggagttgaagaaaaaggctgcaaatttcaatgtgaagaaggcagcttattgg
ggagagggagagagggtgcctttcatatttgtggtgaaggcacttgatgctatatcaaag
gagtcaggtaggattgccatcacggagattgtgtgtaatatgctgaggacagtgatcgag
acgacaccagatgatttattggctgttgtgtaccttttggcaaataggattgcatcagct
catgatggtttggagcttggtatcggggatgcttcgatcatcaaagctcttgcagaggct
tgtggtactaaagaagcacatgttaagaagcaatacaaggagcttggagatttaggcctt
gtagcaaaagccagtcgttcatcacagcctttgatgcgtaaaccggaagcattaactgtt
gccaaagtttttgatacatttcgtcttattgctaaggaatctggcaaagatagtcaagag
aaaaagaagaatcacataaaggcactattagttgcagctagtgattgtgaacctcaatat
ttgattcgtttgctccagacaaagctgcgtattggtttggcagaacaaaccctcttggca
gcactggggcatgctgctgtatactcggagaagcattcatcccctcctgcaaaggttgat
aatcctctagaagaagctgcaaaaattgtcaaacaagtctattctgtaattccagtctat
gataaaatagttcctgctcttctttctggcggtgtgtggaatctcccaaagacatgtagc
ttttcacctgggattcctgttggtcccatgttagctaaaccaaccaaaggggtgtctgaa
attgtggagaagtttcaagatatggagttcacctgtgaatacaagtatgatggagaacgt
gctcagatacattttatggagaatggctcagtggagatatacagtagaaatgcagagagg
aatactggaaagtttccagatgttgttgttgctgtcacaagattaaaaaagccttctgtc
acatcatttgttcttgactgtgaacttgttgcatatgaccgtgagaaacagaaaatccaa
cctttccaggttcttagcacacgcgctcgaaaaaatgttctgatgaatgaaatcaaagtc
aacgtttgcatttatgcttttgacatcctctatcttaatggccaagaactcctccaggag
caactcaatgttcgtagagagcatctttacaactcatttcaagaagagcatggttttctc
cagtttgccactgctatcacatcaaatgatctggaggaaatacaaaagtttcttgatgat
gctgttaattctagctgtgaggggttgatcatcaaaacgttgaagaaagatgctacttat
gagccttcgaagcggtctaacaactggcttaaattgaaaaaggattacatggatagtatt
ggtgattcattagatttagtccccattgctgcattccatggcagggggaaacgcactggt
gtctatggtgcctttctccttgcttgttatgatagtgacaaagaggaattccaaagcata
tgtaaaattggaactggcttttctgaagcaatgcttgaagaacgttctgccagtcttcgg
tcaaaagttattcccaaaccaaagtcatattacagatattcggatacaatcagtccagat
gtatggtttgaaccaactgaggtttgggaggtcaaagctgctgatctcactatcagccct
gttcaccgtgccgccgttggtattgtggatcccgataagggaatttctttgcgatttcca
cgattacttcgtgtccgagaagataagaatccagaggaagcctcctcatctgatatggta
gcggatatgtataatgcgcagaagcacaataataaggacaccaaagatgaaaatgaggaa
gattga

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