Sesamum indicum (sesame): 105176562
Help
Entry
105176562 CDS
T04135
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03022
Basal transcription factors
sind03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105176562
09124 Replication and repair
03420 Nucleotide excision repair
105176562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
105176562
03400 DNA repair and recombination proteins [BR:
sind03400
]
105176562
Transcription machinery [BR:
sind03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105176562
DNA repair and recombination proteins [BR:
sind03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105176562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
SHOCT
DUF1664
Motif
Other DBs
NCBI-GeneID:
105176562
NCBI-ProteinID:
XP_011097708
UniProt:
A0A6I9UGP9
LinkDB
All DBs
Position
LG14:complement(321469..330260)
Genome browser
AA seq
600 aa
AA seq
DB search
MADKQVIKRAKYKSSVKDPGVAGVLKMSIERFVFMPNDPKSTTKLNVEFRMIKGHKFTKE
GSSKQALLNLTQDQGGNYIFEFDSFADRDVCREFVANAIAFHAEAGRVVPDKSAPPVNNE
QLSREETERRIKLLQENSELQVLHKQFVYGGILTEAEFWATRKKLLDQNDSRRPKQRLAL
KNEMWTVKPLSDGQTNRVTFNLTPEIIHQIFAEKPAVRQAYLNFVPNKMTEKEFWTKYSR
AEYLHSTKNVVAAAAEAAEDEELAVFLKRDDMLANEARRKIRRVDPTVDMEADEGDDYIH
LPDRGLLQDEAKDVLDSQYEPYRRSFSQDLNQHAAVVLQGRLVDVELGDTRTVAEALIRT
KQAELSDEISNRNLERKLSDRISRITEIEDLQGPRDPAVAPLSIKDPRDYFDSQQPNALK
ALGDTGSGTKSFRSRVSPREAYGSLRDIVSDIRVMGLSEPIMNQEVALKVLNGLTQNISS
TKLHLGNNPHESVLDRLPKVTKEELMHHWTSVQELLKHFWSSYPITTKYLYAKVTRLKDA
MSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAYYDADVQKRSGKSGERPNGSV
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcggataagcaagtgattaagcgtgctaagtataagtcgtcggtcaaggatcccggg
gttgccggtgttctcaaaatgagtatagagagatttgttttcatgcctaatgatccaaaa
tcaaccacaaagctaaacgtggagtttaggatgattaaagggcacaaattcaccaaggaa
ggttccagcaaacaagccctgcttaatcttactcaagaccaggggggaaattacattttt
gagtttgatagttttgctgatcgtgatgtatgccgggaatttgttgctaatgctattgca
tttcatgctgaagctggaagagtggtccctgataaatctgctcctcctgttaacaatgaa
caacttagcagggaagaaacagaacgacgaattaagctacttcaagaaaacagcgaatta
caggtacttcacaagcagtttgtatatggtggtatactgacagaagctgaattttgggcg
acaaggaagaaattgctggaccagaatgatagcagaaggccaaaacagcgactagcccta
aaaaatgaaatgtggactgtgaaaccattatctgatggccagacaaacagagtgactttt
aacttgacaccagagatcattcatcagatatttgctgaaaaaccagcagttcggcaagca
tatttgaattttgtcccgaacaagatgacagaaaaggagttctggaccaaatattcaaga
gcagaatacctccatagtacaaaaaatgtagttgctgcagcagcagaggctgctgaagac
gaggagcttgctgtttttctgaagcgagatgatatgctggcaaacgaagctcgtagaaaa
atcaggcgtgttgacccaacagtggacatggaagctgatgaaggcgatgattacatacat
cttccggatcgtgggttgcttcaggacgaggccaaggatgttttggactcacaatatgag
ccataccgaagatccttctcgcaagatctgaaccagcatgctgctgttgttcttcaagga
agacttgtagatgtcgagctgggagatacaaggactgttgctgaagcccttatcaggaca
aaacaggctgaattgtctgatgaaatatccaatagaaatttagagagaaagctctcagac
aggatatctcgaattacggagattgaggatcttcaggggcctcgagaccctgcagttgca
cccctcagtatcaaggatcccagggactactttgattctcaacaacctaatgcactaaaa
gcactaggagatacaggttcaggcacaaaatcatttagatccagagtgagcccacgtgaa
gcttatggttccttaagagatatagtatcggatattagagttatggggctgagtgaacca
ataatgaatcaggaggttgctcttaaggtccttaatgggttgactcagaatatctctagc
accaagcttcatcttggaaacaatccacatgagagtgtccttgataggttgccaaaagtt
actaaagaggaactcatgcatcactggacttctgtccaggaattactgaaacacttttgg
tcatcatacccaattacaacaaaatacctctatgccaaggtaaccagattgaaagatgca
atgtcccaagtttatccaaagttacaggagatcaaggaatctgtgcagtctgatttcagg
catcaggtctcccttcttgttcacccaatgcttcaggctctagatgccgcctttgcatac
tacgatgcagatgtacagaagagatctggtaagagtggagaaagaccaaatgggtctgtg
tag
DBGET
integrated database retrieval system
