KEGG   Sulfolobus islandicus L.S.2.15: LS215_2108Help
Entry
LS215_2108        CDS       T00889                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sis  Sulfolobus islandicus L.S.2.15
Pathway
sis03030  DNA replication
sis03410  Base excision repair
sis03420  Nucleotide excision repair
sis03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sis00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LS215_2108
   03410 Base excision repair
    LS215_2108
   03420 Nucleotide excision repair
    LS215_2108
   03430 Mismatch repair
    LS215_2108
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sis03032]
    LS215_2108
   03400 DNA repair and recombination proteins [BR:sis03400]
    LS215_2108
Enzymes [BR:sis01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LS215_2108
    6.5.1.6  DNA ligase (ATP or NAD+)
     LS215_2108
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     LS215_2108
DNA replication proteins [BR:sis03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    LS215_2108
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     LS215_2108
DNA repair and recombination proteins [BR:sis03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     LS215_2108
   NER (nucleotide excision repair)
    Other NER factors
     LS215_2108
   MMR (mismatch exicision repair)
    Other MMR factors
     LS215_2108
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: ACP36101
UniProt: C3MJ14
LinkDB All DBs
Position
1915584..1917389
Genome map
AA seq 601 aa AA seqDB search
MEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKAIIDKVVYIIQGKLWPDFLGYPELG
IGEKFLIKAISIATNTDENSVENLYKSIGDLGEVARRLKSKQQSTGILGFLGTSSKESLK
VDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVL
DAMAIAFGGGQSASEIVERAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLAER
LSNPEEILKKVGGSALVDYKYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYISKYT
EGKEFIIEGEIVAVDPESGEMRSFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDY
TTKPLEVRRKLLESIVKPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDA
IYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFE
SVCKVASGFSDEQLDELQKKLMEIKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISP
LHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQPKKKIESPPIDES
V
NT seq 1806 nt NT seq  +upstreamnt  +downstreamnt
atggagtttaaagttattgccgaatactttgataaattagagaagatatcttcaaggctc
cagcttacagctttactggctgatcttttaagcaaaagtgataaggcaattatagataag
gtagtttatattatacaaggcaaattatggcctgattttctaggttatccagagcttgga
attggagagaaattcttaataaaagcaattagtatagctacgaacacagatgaaaattca
gtagaaaatctctataagtcaataggtgatcttggagaagtagctcgaaggttgaaaagt
aagcagcaaagtacaggaattttaggttttttgggtacatcaagtaaagagagcttaaaa
gtggatgaagtttactctacgttatctaaggtggcattaactacgggagagggtagtaga
gatttaaagataagattactggcaggattgttaaaaaaggcagatccgttagaggccaag
ttcctagttaggtttgttgaaggtcgacttagagttggtataggagatgcgacagtttta
gatgctatggcaatagcttttggcggggggcaatcagcatcagaaatagttgaaagagct
tataatcttagggcggatctaggaaacattgcaaaaattatagtagagaagggaattgaa
gccttaaagactctaaaacctgaagttggaataccaattagaccgatgctagctgaaagg
ttatcaaatcctgaagaaatattaaagaaagtaggtggaagtgcattagtcgattataaa
tacgatggagagagggcccaaatacacaaaaaagatgacaaaatttttatattttctcga
agattagagaacattacttctcagtatccagatgtagtagagtatattagtaaatacact
gaaggcaaagagttcattatagaaggagaaatagtggctgtagatccagaaagcggtgag
atgagatcatttcaagaattaatgcacagaaagaggaagtcagatatttacgaagcaatt
aaagagtacccagtaaacgtatttctctttgatttaatgtattatgaagatgtagattat
actacaaagccattagaagttaggagaaaattgttagaaagtattgtaaaaccaaacgac
tatgtaaaaatagctcatcatattcaagttaataatgtagaggatcttaaatcgttcttc
tatcgagcaatatctgagggtggagagggagtaatggtgaaggcaattggaaaagatgca
atatatcaagctggtgctaggggttggttatggataaagcttaaacgtgattatcaaagc
gagatggctgatacagtagacttagtagttgttggtggtttctatgggaagggtaaaaga
ggcggcaagataagctcactattaatggccgcatataatcctaagactgatactttcgaa
tctgtttgcaaggtggctagtggcttctcagatgagcaacttgatgagttacagaagaag
ttaatggaaataaagagggatataaaacatcctagagttaattctaagatggaaccagat
atatgggtagagccagtttatgtagcggaaataattggagcggagataacaatatctcct
ttacatacttgttgtcaagacgtcgtagagaaggatgctggtttatctataagatttcct
cgatttataagatggagagatgataaaagtccagaagatgctacaaccactgatgagata
cttgaaatgtacaacaagcagcctaagaagaagatcgaatcaccacctatagacgagagc
gtttaa

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