Ruegeria sp. TM1040: TM1040_2339
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Entry
TM1040_2339 CDS
T00359
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sit
Ruegeria sp. TM1040
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sit03032
]
TM1040_2339
03400 DNA repair and recombination proteins [BR:
sit03400
]
TM1040_2339
Enzymes [BR:
sit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TM1040_2339
DNA replication proteins [BR:
sit03032
]
Prokaryotic type
DNA Topoisomerases
TM1040_2339
DNA repair and recombination proteins [BR:
sit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TM1040_2339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
zf-C4_Topoisom
Motif
Other DBs
NCBI-ProteinID:
ABF65071
RoseoBase:
TM1040_2339
UniProt:
Q1GE45
LinkDB
All DBs
Position
2459369..2462050
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AA seq
893 aa
AA seq
DB search
MPVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKNGSVDPEDDFAMTWEVGNDSKK
HVRAIAEALKDDNALILATDPDREGEAISWHLQEALTKRRSIKKDTDVKRVTFNAITKDA
VAEAMKNPRDVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVE
REMEIEAFNPQEYWSVRANLATPRGQSFEARLTVLGGEKLDKFSLANSTAAELAVQAVSS
RKMSVLSVEAKPAARNPSAPFMTSTLQQEASRKFGMGAKQCMNAAQRLYEAGLITYMRTD
GIDMAPEAVSAARDEIAKRYGQEYVPGEPRIYKNKAKNAQEAHECIRPTDMSRDAASLKV
SEDDQRKLYDLIWKRTLACQMAGARLERTTVDIGSDDKQVVLRATGQVVMFDGFMRVYEE
GRDDVVDEDDKRLPQIMQGEALKFAGSLAAQAEKAGKDGSVLSQDGATLALQHHTQPPPR
YTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNRLFPEDKGRIVTIFLLNFFKR
YVEYDFTAALENQLDDVSAGGKDYKELLDSFWRDFSAAISETSDLRISEVLDVLDEALAP
QLYPPREDGGDPRICPKCGAGQLHLKTSRTGGFVGCGNYPECNYTRPISGEGAEGYERVL
GEDDGDEIHLKSGRFGPYVQRGEATPENKKPPRSSLPKQGKDYLPGWGPNEITLEQAVTL
LTLPREIGAHPEGGVVSSNLGRFGPYIMHQRPDEEKPVYVNLKETLDVFEIGMNRAVEML
AEKRANPGRGRSAAAKPLRELGEHPDDKAPVNIMDGRYGPYVKWGKVNATLPKDTEAKDV
TMEMAVELLNEKAAKSGKKKAPAKKAAAKKTTAKKTTAKKAPAKKKEAKASGD
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgccagttgtcgttgtcgaatccccggccaaagccaaaacaatcaataaatatctgggc
tccgactacactgttttggcatcctacggtcacgtccgggacctgcccgcaaagaacgga
tccgttgaccccgaagatgattttgcgatgacatgggaggtcggcaacgactccaaaaaa
catgtgcgcgccatcgcagaggcgctcaaggacgacaacgcattgatcctcgcgaccgac
cccgaccgcgaaggcgaggcgatcagctggcacttgcaagaagcgctcaccaagcggcgc
tccatcaagaaggacaccgacgtcaaacgcgtgaccttcaacgcgatcaccaaggacgct
gtcgccgaggccatgaaaaacccccgcgatgtcgatatgccgctggtagaggcctacctc
gcccggcgtgctctcgattatcttgtgggcttcaacctctctccggtgctttggcgcaaa
ctgcccggcgcgcgctcggccgggcgtgtgcaatcggtttgcctccgcctcatcgtggag
cgcgagatggagatcgaggcgttcaacccgcaggaatattggtccgtccgcgcaaacctt
gccaccccgcgcggccaatcgtttgaggcgcgcctgaccgtgctcggcggtgaaaaactc
gacaaattcagcctcgcaaactcgacggcggcagaactggcggtgcaggccgtcagcagc
cgcaaaatgtctgtcctgtcggttgaggccaaaccggcggcgcgcaacccctctgcgcct
ttcatgacctcgaccctgcaacaggaagcgagccgcaagttcggcatgggcgccaaacag
tgcatgaatgccgcgcagcgtctctatgaggccgggctcatcacctatatgcggaccgat
gggatcgacatggccccggaggcggtctctgccgcgcgcgatgagattgccaagcgctat
ggccaggaatatgtgcccggcgagccgcggatctacaagaacaaggccaagaacgcccaa
gaggcgcacgaatgtatccgcccgaccgacatgagccgcgacgccgcgagcctcaaagta
tccgaagatgatcagcgcaagctttatgacctgatctggaaacgcacgctcgcctgccag
atggcaggtgcccgtctggagcgcaccacagtggacatcggctctgacgacaagcaggtg
gtgctgcgcgccaccggtcaggtcgtcatgtttgatggcttcatgcgcgtgtatgaagaa
ggccgcgatgatgtggtcgacgaggacgacaagcgtctgccgcagatcatgcaaggcgaa
gcactgaagtttgcaggttcgcttgcggctcaggcggaaaaagcgggcaaagacggttct
gtgctgtcgcaggatggcgcaacgctggcactgcagcaccacacccagccgccgccgcgc
tataccgaggccacattggtcaaacggatggaagagctcggcatcggccgcccgtcgacc
tacgccagcgtcatcaccacgatccaggaccgcgaatatgtccgcaaggacaagaaccgc
ctcttccccgaggacaaagggcggatcgtgaccatcttcctgctgaacttctttaagcgc
tacgtggaatatgacttcaccgccgcgctcgagaaccagctcgatgatgtcagtgcaggc
ggcaaggactacaaggaacttctggacagtttctggcgcgacttctcggcggcgatctcc
gagacctccgatctgcgcatctcggaagttctggatgtgctggacgaggcgcttgcgcca
cagctctaccccccgcgagaagatggtggcgacccgcgtatctgccccaagtgtggtgcc
ggtcaactacatttgaaaacctcgcgcaccggcggtttcgtgggttgcggcaactacccc
gaatgcaactatacccgcccgatctcgggcgagggcgccgaaggttatgaacgcgtcctc
ggcgaggatgacggcgacgagatccacctgaagtccggccgctttggcccctatgtgcaa
cgcggtgaggccacgccagaaaacaagaagccgccgcgctcctcgctgccgaaacagggc
aaggactatctgcccggctggggccccaatgagatcacgctcgagcaagccgtgaccttg
ctgacgctaccgcgcgaaatcggcgcgcacccggagggcggcgtggtgtcgtcgaacctc
ggtcgatttggcccctacatcatgcaccagcgtcccgacgaggaaaaaccggtctatgtg
aacctgaaggaaacgctggacgtctttgaaatcggcatgaaccgcgcggtggagatgctg
gcggaaaaacgcgccaacccgggccgcgggcgctctgctgccgcaaaaccgctgcgtgag
ctgggcgaacatccggacgacaaggcgcccgtgaacatcatggatgggcgctacgggcct
tatgtgaaatggggcaaggtcaatgcgactctgcccaaggacaccgaggccaaggacgtg
accatggagatggcggttgagcttctgaatgaaaaagccgccaaatccggcaagaaaaaa
gcgcccgcgaagaaagctgctgcgaagaagaccacagccaagaaaaccaccgcgaaaaaa
gcacccgccaaaaagaaagaggccaaagcctctggcgattaa
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