Ruegeria sp. TM1040: TM1040_2764
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Entry
TM1040_2764 CDS
T00359
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03030
DNA replication
sit03410
Base excision repair
sit03420
Nucleotide excision repair
sit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TM1040_2764
03410 Base excision repair
TM1040_2764
03420 Nucleotide excision repair
TM1040_2764
03440 Homologous recombination
TM1040_2764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sit03032
]
TM1040_2764
03400 DNA repair and recombination proteins [BR:
sit03400
]
TM1040_2764
Enzymes [BR:
sit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TM1040_2764
DNA replication proteins [BR:
sit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TM1040_2764
DNA repair and recombination proteins [BR:
sit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
TM1040_2764
NER (nucleotide excision repair)
GGR (global genome repair) factors
TM1040_2764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_5
Peptidase_M32
Motif
Other DBs
NCBI-ProteinID:
ABF65496
RoseoBase:
TM1040_2764
UniProt:
Q1GCX0
LinkDB
All DBs
Position
2910652..2913459
Genome browser
AA seq
935 aa
AA seq
DB search
MSTSNFGKGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLFKQVEDNKGP
DAPTHVAVIFDHSGKSFRNDMYDQYKANRPPAPEDLVPQFPLTREATRAFNIACKEIEGF
EADDIIATLACQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNKRIDSDGVREKFGVG
PDRVVDVQALAGDSVDNVPGAPGIGIKTAALLINEFGSLEDLLDRAEEIKQPKRRQTLIE
KRDQIEMSKRLVQLDCDMELDFTLDDLEVRDPDADTLLGFLAEMEFRTLSKRMADQLGRE
APTIPEAPSAAAAALELPEAPGFDSAEYTTVRDAETLQQWIDLIREHGYVAVDTETTGLN
EMIADLVGISLCVVPGQACYVPLTHKTGNSDDLFGSDDLAEGQMPLKDALEMLKPVLEDD
AILKIGQNMKYDAKIFARNGIDVTPIDDTMLLSYALHGGMHGHGMDTLSERYLDHQPIPI
KSLLGSGKSAITFDRVSIEDATPYAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLV
PVLAQMEQHGIKVDRDTLSRMSNAFSQKMAALEAEIHELAGETFNVGSPKQLGEILFDKM
SLPGGKKGKTGAYATGADILEDLATEHTLPARVLDWRQLSKLKSTYTDALQEHIHPETGR
VHTSYLQTGANTGRLASSDPNLQNIPVRSEEGRRIREAFVADEGNVLLSLDYSQIELRIL
AHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAINFGVIYGISGFGLA
RNLRIPRGEAQGFIDRYFERFPGIRQYMDDTVNFAKEHGYVQTLFGRKIHTPEIAAKGPR
ASFAKRAAINAPIQGTAADVIRRAMVRMPEAIAHLPARMLLQVHDELLFEVPEDHVEETI
SVAREIMEGAADPAVHMDVKLVVDAGRGQNWAEAH
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgagcactagcaattttggcaaaggctgtcacctccacctgatcgatggctccgccttc
atctttcgcgcctaccacgcgctgccgccgctgacgcgcaaatccgacgggctgcccatc
ggcgcggtctcggggttctgcaacatgctgttcaaacaggtcgaggacaacaagggcccc
gatgcgccgacccatgtggcggtgatctttgaccactccggcaaatcgtttcgcaacgat
atgtacgatcagtacaaggccaatcgcccccccgcgccggaggatctggtgccgcagttc
ccgctgacgcgcgaggccacccgcgccttcaacatcgcctgcaaggagatcgaaggcttt
gaggccgatgacatcatcgctacattggcctgtcaggcgcgcgaggccgggggccgcgtg
acgatcatctcgtcagataaggacctgatgcagctggtcggggacggggtcgagatgctc
gacgcgatgaagaacaagcgcatcgacagcgatggcgtgcgcgagaaattcggcgtcggc
cccgaccgggttgtggatgtgcaggcgcttgcgggcgactctgttgacaacgtgcccggc
gcgcccggcatcggcatcaagaccgccgcgctcctgatcaacgagttcggctcgctggag
gatctgctggatcgcgccgaagagatcaagcagcccaagcgtcgtcaaaccctgatcgag
aagcgcgaccagatcgagatgtcgaaacggctggtgcagctggattgcgacatggagctg
gacttcacgctcgacgatctggaggtgcgcgatccggatgcagatacgctcttgggcttc
ctcgccgagatggaattccgcaccctgtccaagcgaatggccgaccagctgggccgcgag
gccccgaccatccccgaagcgccctccgccgcagccgccgcgctggagctgcccgaagcg
ccgggctttgacagtgccgaatataccaccgtgcgcgacgccgagacccttcagcagtgg
atcgatctcattcgtgagcatggctatgtcgcggtcgataccgagaccaccggccttaac
gagatgatcgcggatctcgttggcatcagcctatgtgtggttccggggcaggcctgctat
gtgccgctcacacataagacggggaactccgacgatctctttggctctgacgatctggcc
gaggggcagatgccgctcaaggacgcgctggagatgctgaaaccggtgctggaggatgac
gccatcctcaagatcggccagaacatgaaatacgatgccaagatctttgcccgtaacggc
atcgacgtgaccccgatcgacgacaccatgttgttgtcctatgcgcttcatggcggcatg
cacggacatgggatggatacgctgtcggagcgctatctcgaccatcagccgatcccgatc
aaatcgctcttggggagcggaaaatccgcgatcacatttgaccgggtgtcgatagaggac
gccacgccctatgcggccgaggacgccgacatcaccctgcgcctctggcagcagttcaaa
ccgcagttgcaccagaaacaggtgaccaccgtctacgagaccttggaacgcccgctggtg
ccggtgctggcgcagatggaacaacatggcatcaaggtggaccgcgacacgctcagccgt
atgtcgaacgcgttctcacaaaaaatggccgcgctcgaggcagagatccacgagctcgcg
ggcgagaccttcaatgtcggctcccccaagcagctgggcgagatcctttttgacaagatg
tctctgccggggggcaagaagggcaagaccggtgcctatgccaccggggcggacattctt
gaggatctggccacggagcataccttgcccgcgcgcgtgttggactggcggcaactctcc
aagctgaaatccacgtacacagacgcgcttcaggagcacatccatcccgaaaccgggcgg
gtacatacgtcttatttgcagaccggcgccaacactgggcgtctggcctcgagcgatccc
aacctgcaaaacatccccgtgcgcagcgaagagggacgccgcatccgcgaggcctttgtc
gcagacgagggcaatgtgcttctgtcgctcgactacagccagatcgagctgcgcatcctg
gcccatgttgcgggaatcgatgcgctaaaacaggcgtttgccgacggccacgacatccac
gcgatgaccgcctccgaggtctttgatgtgccacttgaggagatgactccggacattcgc
cgcaaggccaaggcgatcaactttggcgtgatctatgggatttcgggctttgggcttgca
cgcaacctgcgtattccgcgcggcgaggcccagggatttatcgaccgctatttcgagcgt
ttccccggcattcgtcagtatatggatgacacggtgaacttcgccaaggagcacggttat
gtgcaaacgctctttggccgtaagatccacacgccggagatcgcagccaagggaccgcgt
gcgagctttgcaaaacgcgcggctatcaacgcgcccattcagggcacggccgcagatgtc
atccggcgcgccatggtgcgtatgccagaggccatcgcccacctgcccgcgcgcatgctg
ctgcaggtccacgatgaattgctgttcgaagtgcccgaggatcacgtcgaagagacgatt
tccgtcgcccgcgagatcatggaaggcgcggctgatccggcagtgcatatggatgtaaaa
ctggtggtcgacgcgggacgcggccaaaactgggccgaggcgcattaa
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