Setaria italica (foxtail millet): 101765342
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Entry
101765342 CDS
T02818
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03022
Basal transcription factors
sita03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101765342
09124 Replication and repair
03420 Nucleotide excision repair
101765342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sita03021
]
101765342
03400 DNA repair and recombination proteins [BR:
sita03400
]
101765342
Transcription machinery [BR:
sita03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101765342
DNA repair and recombination proteins [BR:
sita03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101765342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
101765342
NCBI-ProteinID:
XP_012703326
UniProt:
K3Y7G5
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All DBs
Position
VII:complement(24542595..24547034)
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AA seq
432 aa
AA seq
DB search
MYGVGGGGGGFNAPSTTSGRRRNPGDEEEDEEEEGAEGRVLEAWERAYADDRSWEALQED
QSGLLRSIDTKTVVHAQYRRRLLLRSAAAAAARIQKGLIRYLYIVIDLSRAASEMDYRPS
RMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGISHRLTEIGGSPESQINALMGKLECSG
DSSLQNALELVNGYLDQVPSYGHKEVLILYSALNTCDPGDIMETIEKCKKSKIRCSVIGL
AAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGVE
DLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVAP
FDEVSSVPNRIQRGVQNCFGCQQNLFNPDGQTSLHVRCPKCNQHFCLDCDIYIHESLHNC
PGCESQRSFSSL
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcggcggtgggggcggcttcaacgcgccctccaccacctccggccgg
cgccgcaacccgggcgacgaagaggaggacgaggaggaggagggcgccgagggccgcgtc
ctggaggcgtgggagcgcgcgtacgcggacgaccgctcgtgggaggcgctgcaggaggac
cagtcgggcctcctccgctccatcgacaccaagaccgtcgtccacgcgcagtaccgccgc
cgcctcctgctccgatccgccgctgccgccgcggcccgcatccagaaggggctcatacgc
tacctctacatcgtcatcgacctctcccgggcagcttcagagatggattatcgtcctagt
agaatggcagttgttgcaaagcatgctgaggctttcataagagaattctttgaccagaat
cctttgagccatgttggcctagtgacaattaaagatggtatttctcatcgacttacagag
attggagggagcccagaatcacagattaatgctttgatggggaaacttgagtgttctggt
gattcatctctgcagaatgctctagaacttgtcaatggttatttagatcaagtaccatca
tatggtcacaaggaagtcttaattttgtactctgccctaaatacatgtgatcctggtgat
atcatggagacaatagaaaaatgtaagaagtccaaaattagatgctccgttattggtctt
gctgcagagattttcatatgcaaacatctctgcgaagagactggtggatcctacacggtt
gcactggacgagtctcatttcaaagaattgttgctggaacatgctcccccacctcctgca
attgcagaatatgctgcagctaatttgattaagatgggctttccacagaggggtgttgag
gatcttatatctatctgctcttgtcacaagaaaataaagtctggtgctgaaggttacata
tgtcccagatgcaaagttaatgtgtgtgagcttccgacggaatgtcgaacttgtggccta
acactagttagttctccacacttggcaaggtcatatcatcatctcttcccggtagcacca
tttgatgaggtttcctctgtcccgaatagaatccaaaggggagtacaaaactgttttggc
tgtcagcagaacctttttaaccctgatgggcaaactagcctccatgttcgctgcccaaaa
tgcaaccagcacttctgcctggattgtgatatttacatccatgagagcttgcacaattgc
cctggttgtgagagtcaacgcagtttctcatcactgtga
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