Setaria italica (foxtail millet): 101769940
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Entry
101769940 CDS
T02818
Name
(RefSeq) probable RNA-dependent RNA polymerase SHL2
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
sita
Setaria italica (foxtail millet)
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sita03036
]
101769940
Enzymes [BR:
sita01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
101769940
Chromosome and associated proteins [BR:
sita03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
101769940
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RdRP
Peptidase_C65
Motif
Other DBs
NCBI-GeneID:
101769940
NCBI-ProteinID:
XP_022683304
LinkDB
All DBs
Position
VI:1806870..1812136
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AA seq
1229 aa
AA seq
DB search
MVVPREPAATAQVSVGGFRAGLSARGLADHLESVAGRVWRCRVKASCAPPDTYPDFQFQR
RRRLLPAADASGRAAPSPPCRPAAPPHAFVHFAHPEAARRAAAGSELIVRAQNGNGSARA
AARHRDTAEPFRFAGSRVELGNLWAPDAFAVAWRAPEPEDADAAAPAGGLVFEVDPSDGA
CRLVFSCDAAFALPGARGAPAVLRCDVKLEFSFLEIAEVMAFQADDSLLLRLSAAPLLYY
RTAADDVHQPVPFHLPDDDDDPWIRTTDITPSGAIARCWVYRVSFRAWCWPKMKDALAYM
KRQEVPVVFCDIGRRGLNVNDEPAFGQPTEDLFFCVEREGLRFPVLFLVNVLVHKGIVNE
HQLTSEFFGLLEKEDDDVNVAALTELLGEKLQVFYLCRRLKNAQDRAAKNNRLLHLHGSK
KVTGDHNAVVRSMMITPTRAYCLPPQVELSNRVIRHYHRVADRFLRVTFMDEGMQPLNIN
ALNFCVAPIVKDMMSNSPQQKTTVHRRVQTILTKGFCMCGRKYSFLAFSSNQLRKRSAWF
FAEDGTTSTASIRQWMGQFPSNNVAKHAARMGQCFTSTYATVTMQPDEVNEFLEDVKRNG
YNFSDGIGKITPGLAMEVAKRLPLMHNYPPSAYQIRYAGFKGVLAVWPGKNDGIQISLRP
SMRKFESTHLVLEVVSWTKFQPAYLNRQIITLLTSLGVPDAIFWQMQEAMLHNLDRILSD
RDVAYQVVTNCCSEHATIPALMLSAGFTPATEPHLKAMLLAIRSSQLQGLLEKTKIFVPK
GRWLMGCLDELGILEQGQCFIRASVPSLNKYFVKHGSRISLANKSAEVIVGTIVMAKNPC
LHPGDVRILEAVDVPELHHLVDCLVFPKKGKRPHPNEASGSDLDGDVYFVTWDKNLVPPR
KKSWPPMDYSPVEAKQLPRRVRQHDIVDFFLKNMISEILGLISNAHVVHADYSKYGAMDD
KCIQLAELAATAVDFPKTGKMVTMPPSLRPQEYPDFMGKEDDISYKSEKILGKLYRSIQQ
YNLGRSLEDSIRNDVPYDTKLEVPGASHFLADAWQCKCSYESQLNGLLNQYGVRTEAEVV
TGEIYSLTERNKKKKNEIKERLKHAHSKLHQEFRNIFESIGADHGEISDDKKNLVYEMKA
SAWYQVTYHPYWIQFSRKMTEFDGKEMPARLSFAWIAVDYLARIKMRCRGEVDASSKDRS
LHFLRRYGQGREVSCLSEARPLCHFALPI
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgccgcgggagccggcggccaccgcgcaggtcagcgtcggcggcttccgcgcc
ggcctctcggcgcgtggcctcgccgaccacctggagtccgtcgccggcagggtctggcga
tgccgggtcaaggcctcttgtgcgccgcccgacacctaccccgacttccagttccagcgc
cgccgccgcctcctccctgccgcggacgcgtccggccgggcggcgccgtcgccgccgtgc
cgtcccgcggccccaccgcacgccttcgtccacttcgcgcacccggaggccgcgcgccgc
gccgccgccgggtccgagctcatcgtgcgcgcccagaacggcaacggctccgcccgcgcg
gcggcccgccaccgggacaccgccgagccgttccgcttcgcgggctcgcgcgtcgagctg
ggcaacctctgggcgcccgacgccttcgccgtcgcctggcgcgccccggagccggaggac
gctgacgccgccgcgccggcaggggggctcgtcttcgaggtcgacccgtccgacggcgcc
tgccggctggtgttctcctgcgacgccgcgttcgcgctccccggcgcccgcggggccccg
gcggtgctgcgctgcgacgtcaagctcgagttctccttcctcgagatcgccgaggtcatg
gcgttccaggccgacgactcgctgctcctccggctctccgccgcgcccttgctgtactac
cgtacggcagccgacgacgtccaccaaccggtgcccttccacctgcccgacgacgatgac
gacccatggatacggaccaccgacatcacccccagcggcgcgatcgcgcggtgctgggtg
tacagggtctcgttcagggcgtggtgttggccgaagatgaaggacgcactggcgtacatg
aagaggcaggaagtgcctgtcgtgttctgcgacattgggcgtcgggggctcaatgtcaac
gatgagccagcgttcgggcaaccaacggaggacctgttcttctgcgtggagcgtgagggg
ctaaggtttcccgtgttgttcttggttaatgtgctggtgcacaagggaatagtgaatgaa
caccagctcacgtcggagttctttggtttgctggagaaagaagatgatgatgtgaatgtg
gctgcattgacagaactgttgggagagaaattgcaagtgttttatttatgcaggaggcta
aagaatgcgcaggacagggctgccaagaacaacagacttcttcatcttcacggcagcaaa
aaggttactggtgatcacaatgccgtggtgcgaagcatgatgatcactcccaccagggca
tattgcctgccgcctcaagtggagctctctaaccgtgttatccgacattatcatcgagtg
gcagaccggttcctgagggtaactttcatggatgagggtatgcagccactgaacatcaac
gcgctgaacttctgtgtggcgccgatagtcaaggacatgatgtcaaactcgccccagcag
aagacaacagttcataggcgtgtccaaacaattttgacgaagggtttctgcatgtgtggc
aggaagtactcattccttgcattctcatcgaaccagctgaggaagaggtcagcttggttc
tttgcggaggatggcacaacatcgactgcaagcattagacagtggatgggacagttccct
agtaataatgtcgcgaagcacgctgctcgaatggggcagtgcttcacatctacatatgca
acagtaacgatgcaaccggatgaggtcaatgagtttcttgaggatgttaagcgtaatgga
tacaatttctctgatggaattggcaaaatcacgccaggcctcgcaatggaagttgctaag
aggttgcctctgatgcataactatcccccatctgcgtaccagatcagatatgcaggattc
aagggtgttcttgctgtctggccaggaaaaaatgatgggatacaaatttcccttaggcca
agcatgaggaagtttgagtctacccacttggtgttagaagtggtgtcctggacaaagttc
caaccagcatacctgaaccgccagattataacattgctgacctccttgggtgttcctgat
gctatcttttggcaaatgcaggaggcaatgcttcataatctcgacagaattttatcagac
agagatgttgcttaccaggttgtaacaaactgttgctctgagcatgcaaccataccagca
ctgatgcttagtgctgggtttactcctgcaactgagccacacctgaaggcaatgctttta
gctataagatcctcacagcttcagggtcttttggagaaaacaaagatttttgtgcccaag
ggaaggtggttgatgggctgccttgatgaacttgggatccttgagcaagggcaatgtttt
attcgggcctcagtgccgtcactcaacaaatattttgtgaagcatggctcaagaatttcc
ttggcaaacaaaagtgcagaggttattgtaggtacaattgtgatggcaaagaatccctgc
cttcatcctggggatgtccgtatccttgaagcagtagatgtgcctgaactgcatcacctt
gttgattgcttggtcttccccaagaaaggtaagaggccgcaccccaatgaagcgtctggg
agtgatcttgatggggatgtctactttgtgacatgggataaaaatcttgtgcctccgagg
aaaaagagctggccacctatggattactccccggttgaagcaaaacagctaccgcgcaga
gtacgtcaacatgatatcgttgatttcttcttgaagaacatgattagtgagattcttggt
ctgataagcaatgctcatgttgttcatgctgactatagtaagtatggagctatggatgat
aagtgcattcagttggcagaactagcagccactgctgtggacttccccaagaccggcaaa
atggtgacaatgccaccatcccttcgaccacaagaatatcctgacttcatgggaaaggaa
gatgacatctcctataaatcagaaaagatccttggaaagctttatcggtcaatccaacag
tataaccttggaagatctttggaagactctatcagaaacgatgtcccttatgacaccaaa
ctggaagttcctggtgcatcgcatttcctcgcagatgcttggcaatgcaagtgctcgtac
gaatcacagctgaacgggctgctcaatcaatacggcgtgcgcactgaagcagaggtcgtg
acaggggagatatattcgcttacggaaagaaacaaaaagaagaagaatgagataaaagag
aggctcaagcacgcacattccaaactccaccaggagttccggaatatctttgaaagcatt
ggagcagatcatggtgagatctctgacgacaagaaaaatctggtatatgagatgaaggcc
tctgcgtggtaccaggtaacctatcacccatactggatccaattctcaaggaagatgact
gagtttgatggtaaggaaatgccggcaaggctcagctttgcatggatcgctgtagactac
ttggcacgcataaagatgaggtgccgaggagaagtggatgccagttcaaaggaccgcagc
ctacattttctgcgacgatacggtcagggccgtgaggtttcctgcttgtctgaagcaaga
ccactctgccattttgccttgcctatttga
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