Setaria italica (foxtail millet): 101774761
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Entry
101774761 CDS
T02818
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1 isoform X2
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita04120
Ubiquitin mediated proteolysis
sita04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101774761
04120 Ubiquitin mediated proteolysis
101774761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sita04121
]
101774761
Enzymes [BR:
sita01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101774761
Ubiquitin system [BR:
sita04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101774761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_11
zf-RING_16
zf-RING_5
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
101774761
NCBI-ProteinID:
XP_004952892
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All DBs
Position
I:complement(28863436..28869180)
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AA seq
504 aa
AA seq
DB search
MIRLQTYTAFSLLAMASAVYYAFSSQEQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRLFLGSLREAEVERLNEQSWREVVEILFAITIFRQDFSVSLLAMVAALLLVKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFMAFLLIVDCLFLSNSLRPLIEKREASVAIFSFEYMI
LATSTVSTFVKYIFYVTDMLMEGQWERKAVYTFYLELISDLVHLSLYMLFFVAIFLNYGV
PLHLIRELYETFRNFRIRIADYLRYRKITSNMNERFPDSTAEELNANDATCIICREEMTT
AKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRAASSRQYGAQPGVQPAAGTGT
PASEGAASENMSRRQAKLEAAAAAASLYGRSFAYPPANTLNRSVPPQSASSIPQSEASCS
NQSQKDQELQFQNTNDGLAPQAFNAHGAISSGTSTRDLESSLQKAQENFIKSQIEMLQIQ
LQMVQRGAAVSATNNENAEHRKNG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtcttcagacgtacacagcgttcagcctgctggcgatggcatcggcggtgtac
tatgccttcagtagccaggagcagttctacccggcgatggtctacctctccacctccaag
atctgcttcgtgctgctcctcaacacaggcctcgtcgccatgtgcgtcgcctggcaactc
gtcaagcgcctcttccttggatcgctccgggaggccgaggttgagcgtctcaatgagcag
tcctggcgggaggtcgttgagatcctctttgccatcaccatcttccgccaggacttctca
gtctccttgcttgccatggtcgctgcgctgctccttgtcaaagcactgcactggctggcc
cagaagagggtcgaatacatcgagaccacaccgtccgtgcccatgctctcgcacataagg
atcgtttccttcatggcgtttctgctcatcgtcgactgcctcttcctgtccaactcgctc
aggccgctcatagagaaacgggaggcatcagttgccatcttctcctttgagtatatgata
ctggcaacatccacagtatcaacatttgtgaagtatatattctatgtcaccgacatgcta
atggaaggtcaatgggagagaaaggcagtgtatacattttacttggagctcatcagtgac
cttgtgcacttgtcattatacatgctcttctttgtagctatcttcctgaactacggtgtc
ccgctgcacttgatccgtgagctatatgagaccttccgcaacttcagaattcgcattgca
gattatctacgctacagaaagatcacgtccaacatgaatgaacgctttccagattctaca
gcagaagagctcaatgcgaatgacgctacatgtattatttgccgtgaggagatgactaca
gcaaagaagctgctttgtgggcatctattccatgtccattgtctaaggtcatggctagag
cgccagcacacttgccctacgtgcagagctccaatcattcccccagataatggacgtgct
gcatcatcgcgacaatatggagctcaacctggagtccagcctgctgcaggtactggcact
ccagcctcagaaggagcagcaagtgagaacatgagcaggcgccaagcaaagcttgaagcg
gcagcagcagcagcttctttatatggaagatcttttgcttatcctccagcaaacacccta
aataggtcagttcctccccagtctgcatctagtataccacaatctgaagcaagttgctcc
aatcaatcccagaaagaccaagaactgcagttccaaaacaccaacgatggtttagcacct
caggcttttaatgcacatggtgctattagttcaggaacaagcaccagggatcttgaaagt
tcactgcagaaggcacaagaaaactttataaagagccagatagagatgttacaaatccaa
ctgcaaatggttcagcgcggtgctgctgtatcagccactaacaatgagaatgcggagcac
agaaagaatggctga
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