KEGG   Sinorhizobium sp. RAC02: BSY16_4675Help
Entry
BSY16_4675        CDS       T04514                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
six  Sinorhizobium sp. RAC02
Pathway
six03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:six00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BSY16_4675 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:six03400]
    BSY16_4675 (ligD)
Enzymes [BR:six01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BSY16_4675 (ligD)
DNA repair and recombination proteins [BR:six03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BSY16_4675 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AOF93232
UniProt: A0A1B3MJD8
LinkDB All DBs
Position
pBSY16_1:687718..690357
Genome map
AA seq 879 aa AA seqDB search
MASDKLSTYKSKRNFKQTQEPSGSAAVRQANQLRFIVQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKSPE
EALKKGDLKFMLHGMRLSGSFVLVRMRNDRDGGKRTNWLLIKHHDEHAVDENGAAILDEN
MTSVASGRKMEQIAAGKGRYPVAFMTASGEVEADAVWDSKHGLAADERKKRARKDVATST
AADLPDFIPPQLCQTLERPPAGDNWLHEIKFDGYRIQMRVADGGVTLKTRKGLDWTAKYP
EIAEAAAALPDCIIDGEICALDDNGAPDFAALQAALSERNTGNLVYFAFDLLFDGGEDLR
RKPLVDRKARLQQLLVDATKDPHLRFVEHFETGGDAVLRSACKLSLEGIVSKQADAPYRS
GRTDTWAKSKCRAGHEVVIGAYARTNGKFRSLLVGVNRGEHFVYVGRVGTGYGAKKVETL
LPKLRALETSKSPFTGIGAPRKEKEVFWLQPELVAEIEFAGWTADGLVRQAAFKGLREDK
AAAEVEAEKPASPAKTETPEPAPETNAKPARRKGAKAEVMGVFISNPDKPLWPDAGDSKP
VTKEDLARYHQAVGAWLTEHVKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKVFG
DKKPYLQVDRIEGLIAIAQIGGVELHPWNCEPGKPEVPGRLVFDLDPGPDVPFSAVVAAA
REMRDRLDDLGLISFCKTTGGNGLHVVTPLAVNSRKPLSWAEAKGFAHDVCQEMARDNPD
AYLIKMTKSLREGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSNLDPKRF
TVRTVPALLAKTSAWEDYCDGQRPLEQAIKRLGKHKAAA
NT seq 2640 nt NT seq  +upstreamnt  +downstreamnt
atggcgagtgacaagctctcaacctacaagagcaagcgcaacttcaagcaaacgcaggaa
ccaagcgggtctgccgctgtgcgacaagcaaatcagcttcgcttcattgtccagaagcac
gatgccactcgccttcactacgatcttcgcctcgaactcgacggcgtcttcaaatcttgg
gcggtgacgaagggcccatcgctcgatccacatgacaagcggctggccgtcgaagtcgag
gaccaccccctggactatggcgacttcgaaggcaccatcccgaaaggccaatatggcggt
ggtacggtcatgctgtgggatcgcggctactgggaacccgaaggcaacaagtccccggaa
gaagctttgaaaaagggtgacctcaagttcatgctccatggcatgcgcctgagtggcagc
ttcgttctggtgcggatgcgcaatgatcgcgatggcggtaaacggaccaactggctgctg
atcaagcatcacgacgaacacgccgtcgatgagaacggcgctgccatcctggacgagaac
atgacctcggtcgcatccggccggaagatggaacagatcgccgccggtaaggggcggtat
ccggtagcgttcatgacggcaagcggggaggttgaggccgatgctgtgtgggacagcaag
cacggcctcgcggccgacgagcgcaaaaagagggcccgcaaggatgtagccacatcgacg
gccgctgacctgcccgacttcataccgccgcaactctgccagacgctcgaacgccctccg
gccggcgacaactggctgcatgagatcaagttcgacgggtacaggattcagatgcgggtc
gctgacggcggggtgacgctgaaaacccgaaaggggttggactggaccgcgaagtatcct
gagattgcggaagcagccgcggcgcttcccgattgcatcatagacggggagatttgcgcg
ctcgacgacaacggcgccccggactttgccgcattgcaggcagcgctgtcggagcgcaac
accggcaatctcgtctattttgcattcgacctcttgttcgatggcggggaagaccttcgc
agaaagcctttggtcgaccggaaagcccgcctgcagcagttgcttgtggacgcgaccaag
gatccgcatctgcgtttcgtcgagcatttcgagacgggcggcgatgcggttctacgctcc
gcctgcaagctctcgcttgaggggatcgtctcgaaacaggcggatgcgccctatcgatcc
ggccggaccgatacgtgggcgaaatcgaaatgccgggccgggcatgaggttgtcatcggc
gcctacgccaggacgaacggaaagttccgctccctcctcgtcggcgtgaatcgcggcgaa
cacttcgtctatgtcggccgggtcggcacgggctatggcgcgaagaaggtcgaaacgctt
ctaccaaaactgagggcgctcgaaacttcgaaatcgcccttcaccgggatcggcgcaccg
agaaaagaaaaggaagtcttctggctgcagccggagctggtcgccgagatcgagttcgcc
ggctggacggccgacggcctggttcgccaggctgccttcaagggccttcgggaagacaag
gcggcggcggaggtcgaagcggagaagccggcctcgccggcgaagacggagactcccgag
cccgcgcctgaaaccaatgcgaaacccgcgcgccgcaagggcgccaaagcggaggtcatg
ggcgttttcatctccaatccggacaagccgctttggccggacgctggtgacagtaagccc
gtcaccaaggaggatctggcccgttatcaccaagccgtcggcgcctggctcaccgaacac
gtcaagggtcgcccctgttcgatcatccgcgcgccggatgggatcggcggtgaacagttc
ttccagcgccacgccatgcccggcacctcgaacctgctggaattggtcaaggtcttcggc
gacaagaaaccatacctgcaagtcgaccggatcgaagggctcatcgccatcgcgcagatt
ggaggtgtcgagctgcacccgtggaattgcgaaccgggaaagcccgaagtgccgggccgg
ctggtcttcgacctcgatcccgggccggatgttccattctcggctgtcgtcgcggccgcc
cgcgagatgcgcgaccgactggacgacctcgggctcatcagtttctgcaagacgaccggc
ggcaatgggctgcatgtcgtgacgccacttgcggtcaattcccgcaagccactctcctgg
gccgaggcaaagggctttgcccatgacgtctgccaggagatggcccgcgacaacccagac
gcctatctcatcaagatgaccaagagcctgcgggaaggccgcatctttctagactatttg
cgcaacgaccgcatggcgacggccgtcgcccctctgtcaccaagggcgcgtccgggcgcc
accgtgtcgatgccgctgacctggacgcaggtcaaatccaatctcgacccgaagcggttc
acagtgcggaccgtgccggcgctgctggcgaagacaagcgcctgggaagattattgcgac
ggacagcgcccgctcgaacaggccatcaagcggctcggcaagcacaaggctgcggcatga

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