Shewanella japonica: SJ2017_1155
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Entry
SJ2017_1155 CDS
T04959
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sja
Shewanella japonica
Pathway
sja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJ2017_1155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sja03019
]
SJ2017_1155
Enzymes [BR:
sja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SJ2017_1155
Messenger RNA biogenesis [BR:
sja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SJ2017_1155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
P-loop_SecA
AAA_19
Gag_p24
Flavi_DEAD
B12-binding
IL1
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ARD21482
LinkDB
All DBs
Position
complement(1376311..1377612)
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AA seq
433 aa
AA seq
DB search
MKFESFSFAPEILSAIADCGYKTMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPLL
QKMVENPREVQHSNTRALILTPTRELAAQVAENITDYSKNINIEVLTIYGGVKVATQAQK
LKRGADIIVATPGRLLEHLLACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKQR
QNLLFSATFSTSVKKLANEMLNKPKVITADKQNTTAATVSQVVYPVEQRRKRELLSELIG
TKNWQQVLVFTATRDAADVLVKELNLDGIPSAVVHGEKGQGSRRRALREFVEGKVRVLVA
TEVAARGLDIQNLGYVVNYDLPFLAEDYVHRIGRTGRAGKSGTAISFVSREEERTLADIK
KLIDQPIRRITMPGYEVGSRELLLKQIQKRRSFAKKQQRVDNAGAQVVAERNMQGRRVTV
GKSTSTVKYKKLK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaatcttttagcttcgcccctgaaatattaagtgcgatcgctgattgcggt
tataaaactatgacacccgttcagcaacaagctattccagctatccgccgtggtgaagat
gtacttgcaagtgcgcaaacgggcacaggtaaaacagctgcttttgcactgcctttacta
caaaaaatggttgagaacccacgtgaagtgcaacactcaaacacccgcgcgcttatttta
acgccgacacgtgagcttgctgcacaagttgctgaaaacatcaccgattacagtaaaaat
attaacattgaagtgctgaccatctatggtggtgtaaaagtggcaacccaagcgcaaaaa
ctaaagcgaggcgcagatattattgttgccacccctggtcgccttttagaacacttatta
gcctgtaatttaagtttatcaaacgtggaatttttagtgcttgatgaagccgatcgtatg
ttagatatgggctttagcactgatattcaaaaaatactgcaagccgttaacaagcaacgt
caaaacttactcttctcagctactttttcaacatcagtgaaaaagttagccaatgaaatg
cttaataagccaaaagtgattaccgctgataagcaaaacaccacagcagcaacagtaagc
caagtagtttaccccgtagagcagcgccgtaagcgtgagttattgtcagagctcatcggt
accaagaattggcaacaagtattagtgtttaccgcaacacgtgatgccgccgatgtattg
gttaaagaactgaatttagatgggattccatctgcagttgttcatggtgaaaaaggccaa
ggcagccgtcgccgtgcattacgtgaatttgttgaaggtaaagttcgtgtgctagttgca
acagaagtggcagcccgtggtttagatattcaaaacctaggttatgttgttaactatgat
ttacctttccttgctgaagattatgttcaccgtattggtcgcacaggtcgagctggtaaa
tctggcactgcaatttcatttgttagccgtgaagaagagcgaactcttgcggatattaaa
aagttaatcgatcagcctattcgcagaattaccatgccaggttacgaagtcggcagcaga
gagttattgctaaaacaaattcaaaaacgtcgtagctttgccaaaaaacagcaacgagtt
gacaatgcgggtgcacaagttgttgcagagcgaaacatgcaaggacgccgtgtcactgtt
ggtaaatcaaccagcacagttaagtataaaaaactaaaatag
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