Shewanella japonica: SJ2017_4004
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Entry
SJ2017_4004 CDS
T04959
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sja
Shewanella japonica
Pathway
sja03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SJ2017_4004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sja03021
]
SJ2017_4004
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_4004
Enzymes [BR:
sja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SJ2017_4004
Transcription machinery [BR:
sja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SJ2017_4004
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SJ2017_4004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ARD24233
LinkDB
All DBs
Position
complement(4756142..4760173)
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKFTDQDPTGERGFEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAPGTVKDIKEQ
EVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDSLFVRIDRRRKLPATIILRALEFSTQEILDLFFERIEFKIKQDSLVMA
LVPDRLRGETASYDIKDSEGKLLVEAGRRITARHIKQLEKTNTTELEVPVDYIVGKFAAQ
DYIDEDTGEVLVSANAEITLEDLAKLSLAGIKEVDTLFINDLDHGAYISDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAESLFQNLFFSEERYDLSKVGRMKFNRRLEISEDEGAGV
LSKEDIVHVMKKIIEIRNGYDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDCVV
TDEVEYLSAIEEGRYVIAQANIEIDSSNRMLEEQIACRHKGESTFMRAADIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERTLAVDSGVVVAAK
RGGVIDYVDASRIVVKVNEAELTPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGDPIVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGIEKDKRALEIEEMHVAQARKD
LGEEFEILEEGVLSRARNLLLSAGFSQAKLAELPRKDVLIQVIDDEAKQTELEQLAEQHE
ELKADFDKKFEVKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPIEDMPYDETGDPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGNRITAMLEEQRELA
ELRDYIRQVYELGDEVLQKVDINSFTDDEVLRLAKNLKGGLPVATPAFDGAKEKEIKQML
ELAGLPDSGQLTLCDGRTGNEFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMHPGM
PESFNVLLKEIRSLGINIELDQE
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgtaaagactttggaaaacgtccaaaa
gttttggatattccgtatttgttgtctattcaattagactcttttaagaaattcaccgat
caagatcctacgggtgaacgtggctttgaagctgctttccgtagcgtttttcccatcaag
agcttttctggcaactctgaactgcaatatgtcagttacaagctaggtgagccagttttt
gatgtgaaagagtgtcagatccgcggtgttacatattcggcaccactacgcgttaaattg
cgtatggttctttatgaccgtgaagctgcaccaggcacagtcaaagatattaaagaacaa
gaagtctacatgggtgatatcccattgatgactgagaacggtacctttgtaattaatggt
actgagcgtgtaattgtttctcaattacatcgttctccgggtgttttctttgatcatgac
cgtggtaaaacccactcatctggtaaggtgctttataacgcacgtattattccttaccgt
ggttcatggcttgactttgaattcgatccaaaagattcattatttgtacgtattgaccgt
cgtcgtaaattacctgcgactatcatcttacgtgcgcttgaattttctactcaagaaatc
ttggatttattctttgaacgtattgagttcaaaattaagcaagattcacttgttatggca
cttgtgccagatcgtctacgtggcgaaactgcaagttacgacatcaaagattctgaaggt
aagcttttagttgaagctggccgtcgtattactgcacgtcacattaagcagcttgaaaaa
accaacactactgagcttgaagtaccagtagattacatcgttggtaagttcgctgcacaa
gactacattgatgaagatactggtgaagtattagttagcgcaaatgctgaaatcaccctt
gaagacctagctaagctttctttagcgggtattaaagaagttgatacattatttatcaac
gatcttgatcatggtgcatatatctcagacacattacgtattgattctacaactaaccgc
cttgaagcattagttgaaatctaccgtatgatgcgtcctggtgagccaccaaccaaagat
gctgctgaaagcttattccagaacttgttcttcagtgaagagcgttatgacctttctaaa
gtaggtcgtatgaagttcaaccgtcgtcttgagatttctgaagatgaaggtgctggcgta
ctgtctaaagaagacatcgtacacgttatgaagaaaatcatcgaaatccgtaatggttac
gatgaagtcgacgatattgaccacttaggtaaccgtcgtattcgtagcgttggtgagatg
gctgaaaaccaattccgtgttggtctagttcgtgttgagcgtgctgttcgtgaacgtcta
tctctaggcgatctgaatgagcttatgccacaagatctaatcaacgctaagcctatttct
gcggcagtgaaagaattctttggttcttcacagttgtcacagttcatggatcaaaacaac
ccgttgtcagaagtaacgcataagcgtcgtatttctgctcttggtcctggtggtttaaca
cgtgaacgtgctggtttcgaagtacgtgacgtacatccaactcactacggtcgtttatgt
ccgattgaaacgccagagggaccaaacattggtctaattaactctttagcaagtttcgct
cgtactaactcttatggcttcctagaaacaccttaccgtaaggtggttgattgtgtggtt
actgatgaagttgaatacttatcagcaatcgaggaaggccgttatgtgattgcacaggca
aacatcgaaattgattcttcaaaccgtatgcttgaagaacaaatcgcatgtcgtcataaa
ggtgaatctacctttatgcgtgctgctgatatccagtatatggatgtatcaccacaacag
attatttctgttgcggcatcacttattccgttcttagaacacgatgatgctaaccgtgca
ttgatgggtgcaaacatgcaacgtcaagccgttcctactttgcgtgctgataagccgctt
gttggtacaggtattgagcgtactcttgctgttgactcaggtgttgttgtcgctgcgaag
cgtggcggtgttatcgactatgttgatgctagccgtatcgtagtgaaagttaacgaagca
gaattgacaccaggtgaagctggtatcgatatctacaacttaactaaatacactcgttct
aaccaaaacacttgtattaaccaacgtccttgttgttctgttggtgatccaattgttcgt
ggtgatgttttagctgatggtccgtctaccgatttaggtgacttggccctaggtcaaaac
atgcgtatcgcattcatgccttggaatggttataacttcgaagattcgatcttaatctct
gagcgcgtagcgcaagaggatcgtttcactactattcatatccaagagctttcatgtatt
gctcgtgatacgaaattaggtagcgaagaaatcactgctgatattccaaacgtaggcgaa
tctgctctatctaaattagacgagtcaggtattgtttacattggtgcagaagtaaaaggc
ggcgacattctagttggtaaagtgacacctaaaggtgaaactcagctgactccagaagaa
aagctattgcgtgcaattttcggtgaaaaagcttctgacgttaaggacagttcattacgt
gttcctaactcagttaaagggactatcatcgatgtacaagtcttcactcgtgacggtatc
gaaaaagataaacgtgctcttgaaattgaagagatgcatgttgcccaagcgcgtaaagat
ttaggcgaagagttcgaaatccttgaagaaggtgttttgagccgtgcacgtaacttatta
ctatctgctggtttctcacaagctaagcttgctgaattaccacgtaaagatgtattaatt
caagttattgatgatgaagctaagcaaactgagcttgagcaattagccgagcaacatgaa
gagcttaaagctgacttcgataagaagttcgaagttaaacgtcgtaaaatcacccaaggt
gatgacttagctccaggcgtactaaagattgttaaggtttaccttgcagttaaacgtact
atccaacctggtgataagatggcgggtcgtcacggtaacaaaggtgtaatctctaagatt
tgtcctatcgaagacatgccatacgatgaaactggtgatccagttgatatcgtactaaac
ccattgggcgtaccatcgcgtatgaacattggtcaggtactagaagttcacttaggtgct
gctgctaagggtatcggtaatcgtattactgctatgcttgaagagcaacgtgaacttgct
gaactgcgcgactacatccgccaggtatatgaattaggtgacgaagttctacagaaagtc
gacatcaactcattcactgacgatgaagtattgcgtctggctaaaaaccttaaaggtggt
ttaccagttgctacgccagctttcgatggtgctaaagaaaaagagatcaagcaaatgctt
gaacttgcaggcttacctgattctggccagttaacattatgtgacggccgtaccggtaac
gaatttgagcgtaaagtaactgttggttacatgtacatgctcaaactgaaccacttagtt
gatgacaagatgcacgcccgttctactggttcgtacagcttagttacacaacagccattg
ggcggtaaggctcaattcggtggtcagcgtttcggtgagatggaagtatgggcactagaa
gcatacggtgctgcatatactctacaggaaatgctaacggttaaatcagatgacgttaac
ggtcgtactcagatgtataagaacatcgtcgacggtaaccatcagatgcacccaggcatg
cctgagtctttcaacgtattgttgaaggaaattcgttcacttggtattaatatcgagttg
gatcaagagtaa
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