Salimicrobium jeotgali: AAV35_013115
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Entry
AAV35_013115 CDS
T04359
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sje
Salimicrobium jeotgali
Pathway
sje03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sje00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AAV35_013115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sje03021
]
AAV35_013115
03400 DNA repair and recombination proteins [BR:
sje03400
]
AAV35_013115
Enzymes [BR:
sje01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AAV35_013115
Transcription machinery [BR:
sje03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AAV35_013115
DNA repair and recombination proteins [BR:
sje03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AAV35_013115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AKG05602
UniProt:
K2G570
LinkDB
All DBs
Position
complement(2584305..2587913)
Genome browser
AA seq
1202 aa
AA seq
DB search
MIDVNNFEYMKIGLASSDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKSKVRRERMGHLELAAPISHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYIVTDPGETGLEKKQLLSEKEYRSYREKYRTGFHADMGAEAIRLLLY
DIDLDEEVGTLKEELKTAQGQRRTRAIKRLEVLESFRNSGNDPAWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPTIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIIVGPSLKMYQCGLPRE
MALELFKPFVMKELVSRGLAHNIKSAKRKIERVHDEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLSLERKGAIGEGMRFKDLNEALMAYQNGYVHLHTRVAVQ
ASSLKNETFTEAQKNQMLVTTVGKLIFNDMLPASFPYMNEPTQSNLEIKTPDHYFIDKGT
DVHEDLKQREVVPPFKKGILGDIIAEVFKRFSISETSRMLDEMKDLGFKYSTKAGITVGV
SDVVVLSDKEEILDEAQAKVDKVSKQYRRGLITDTERYNRVIEIWSQAKDTIQERLMASL
DTTNPIYMMSDSGARGNASNFTQLAGMRGLMANPSGQIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLNVSALKEGSEVIEPLV
DRLVGRTSFQKVTHPETGEVLAVRNEIISEEAAKTIEDSGVEEVTIRSAFTCHTKHGVCK
KCYGRNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIV
EARNPKGQAVISEIDGSVYDVKEVKEKLEITVQGAVESRSYTAPYGARMKLNVGDEVKSG
DALTEGSIDPKELLQVRGLEGVEAYLLKEVQKVYRMQGVEISDKHVEVMVRQMLRKVRVL
DSGDTDVLPGTLMEIHQFKEANQRVLMEGGQPAVGRPVILGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMNRYRTIQSEHENKNREEQVQEEPT
QA
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtaaataattttgaatatatgaagataggtttagcttcatccgataagatt
cgttcctggtcatacggagaagtgaagaagccggaaacaatcaactacaggacgttgaaa
ccggagaaggacggtcttttctgtgagcgtattttcggtcctcaaaaggactgggagtgt
cactgcggaaaatacaaacgtgtccggtacaaaggaatcgtttgtgaccgttgtggagtg
gaagtgacgaaatcgaaagtacgccgcgagcgtatggggcacctggaacttgctgccccg
atttctcacatctggtacttcaaaggaattccgagccggatgggacttgtacttgatatg
tccccgagagcgctggaagaggtcatttattttgcctcttacatcgttacggatccggga
gaaacgggccttgagaagaaacagcttctttccgagaaggaataccgttcgtatcgcgag
aagtacagaaccggttttcatgctgatatgggagccgaagcaatccgtctccttctatat
gatatagatcttgatgaagaagtgggaacacttaaagaagaattgaaaacagctcagggg
cagcgacgcacaagagcgattaagcgtctcgaggtgctggagtccttccgtaactcagga
aatgatcctgcgtggatgattcttgatgttcttccggtcatccctccggagcttcgtccg
atggtacagctggatggaggccgttttgcgacatccgacctgaacgatctgtatcgccgg
gtcatcaaccgtaacaaccgtctgaagcgtctgcttgatcttggagctccgactattata
gtgcaaaacgaaaaacgtatgcttcaggaagcagtggatgcgctcatcgataacgggcgt
cgcggtcgtccggtcaccggtcccggtaaccgtcctttgaaatctctttctcacatgctg
aaagggaaacagggtcgtttccgtcagaacctgctcgggaaacgtgtcgactattccggc
cgttccgttatcatcgtaggtccgagtctgaaaatgtaccagtgtggactcccgagagaa
atggcgctggaactgttcaaaccgttcgttatgaaagagcttgtctcaagaggtcttgct
cacaacatcaaatcggcgaaacgtaagattgaacgggttcacgacgaagtatgggatgta
ctggaagacgttatcaaagaacatccggtactgttgaaccgtgcacctacacttcaccgt
ctgggtatccaggctttcgaaccgacactggtggaaggacgggcaatccgtcttcacccg
ctcgtttgtactgcttataacgcagacttcgacggggaccagatggccgtgcacgttcct
ctttcttccgaggctcaggcagaagcacgcatcctgatgcttgccgctcagaacatcctg
aacccgaaagatggaaaaccggtcgttacaccgtcccaggacatggtactcggtaactat
tacctttctcttgagaggaaaggcgctatcggtgaaggtatgagattcaaggatctgaac
gaagctcttatggcttatcagaacggatatgtacatctgcacacacgtgtcgcagtacag
gccagttcactgaagaatgaaactttcactgaagcacagaagaaccagatgctcgttacg
actgtcgggaaacttattttcaacgacatgcttccggcttcgttcccttacatgaacgaa
ccgactcagagcaacctggaaattaaaacacctgatcattacttcatcgacaaaggtacg
gatgtccacgaagatctgaagcaaagagaagttgtaccacctttcaaaaaaggtatactc
ggtgatatcatcgctgaagtgttcaagcgcttctctatcagtgaaacgtcccgtatgctg
gatgagatgaaagatctcggtttcaaatattccacgaaggccggtattacagtcggggtt
tccgacgtagtagtactgagtgacaaagaagaaattctcgatgaggcacaggcgaaagtg
gataaagtctccaagcagtaccgccgtggtctaattacagatacagagcgttataaccgc
gtcattgaaatctggtcacaggcgaaagatacgattcaggaacgtctgatggcgtctctc
gatactaccaacccgatttacatgatgagtgattccggagcgcgtggtaacgcatccaac
ttcactcagctcgccggtatgcgtggtttgatggctaacccgtccggacagatcatcgaa
cttccgatcaagtccagtttccgggaaggtcttactgttcttgagtactttatttccaca
cacggggcacgtaaaggtctagcggacaccgcgcttaagactgccgactccgggtacctc
acccgtcgtcttgtagacgtggctcaggatgtaattgtacgtgaagatgattgcggaacg
gacagaggactgaacgtgtccgctcttaaagaaggttccgaagtcatcgaaccgctcgtg
gatcgtctcgttggacggacgtcattccagaaagtgactcatccggagaccggagaggtg
ctggctgtgcgtaacgaaatcatctccgaagaagcagcgaaaacgattgaagattccgga
gtggaagaggtaactatccgctcggccttcacttgtcatacgaaacacggcgtttgtaag
aagtgttacggtcgtaacctggcaacaggtgacgaagtggaagtcggagaggcagtagga
atcattgctgctcagtctatcggtgaacctggtacgcagcttactatgcgtacgttccac
acaggcggagttgccggagatgacatcacgcagggtcttccgcgtatccaggagatcgtg
gaggcacgtaatccgaaaggacaggcggtcatctcagaaatcgacggttcggtgtatgat
gtgaaagaagttaaagagaaacttgaaatcactgtacagggagccgtagaatcccgaagt
tatacagctccttacggggcaagaatgaaactgaacgtcggagatgaagtgaaatccggg
gacgctcttacggaaggttctatcgatccgaaagaactgcttcaggtaagaggtcttgaa
ggggtggaagcttacctccttaaagaagttcagaaagtgtaccgtatgcaaggggtggaa
atttccgataaacacgtagaagtaatggtgcgccagatgcttcgtaaggtgcgtgtgctg
gactccggtgatacggatgtacttccagggactctcatggaaatccatcagttcaaagaa
gccaaccagcgtgtgctcatggaaggcgggcagccggcagtcggcagaccggtcatcctt
ggtattacgaaggcttcccttgaaacggacagcttcctttcggctgcttccttccaggaa
acgactcgtgtcctgaccgatgcagcgatcaaaggaaaacgcgatgaactacttggtctt
aaagagaacgttattatcggtaaacttgtgcctgcgggtaccggcatgaatcgttatcgt
acgatccagtccgaacacgagaacaagaaccgggaagagcaggttcaggaagaacctacg
caagcttaa
DBGET
integrated database retrieval system
