Sphingobium indicum UT26S: SJA_C1-21470
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Entry
SJA_C1-21470 CDS
T01201
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sjp
Sphingobium indicum UT26S
Pathway
sjp03420
Nucleotide excision repair
sjp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SJA_C1-21470 (uvrD)
03430 Mismatch repair
SJA_C1-21470 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjp03400
]
SJA_C1-21470 (uvrD)
Enzymes [BR:
sjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SJA_C1-21470 (uvrD)
DNA repair and recombination proteins [BR:
sjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SJA_C1-21470 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SJA_C1-21470 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BAI96981
NITE:
SJA_C1-21470
UniProt:
D4Z2Z9
LinkDB
All DBs
Position
1:2148876..2151152
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AA seq
758 aa
AA seq
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MTLPAPSPDDPAYLQGLNEPQREAVLSTEGPVLVLAGAGTGKTAALTARLAHLIATRRAY
PSEILAVTFTNKAAREMRERVGRMIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLQSNFT
ILDTDDQLRLMKQLIQAEGIDEKRWPARQLAGLIDQWKNKGLTPEEIGAGESEGYANGRG
QKLYAAYQARLRDVNACDFGDLLLHVLTILKRHRDVLESYQQRFRYIMVDEYQDTNSSQY
LWLRLLAQSSKNICCVGDDDQSIYSWRGAEVANILRFENDFPGAKIIRLEQNYRSTPHIL
GAASGVIAENGNRLGKTLWTDIDVGEKVRVIGVWDGPEEARRVGEEIESIERGGRSLDEV
AILVRAQHQTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERI
VNVPKRGLGDKAVEKLHRLARTEGVPLALAAARILDTDEMTPQARRSLGAFIGDLARWRD
RAAQLPHAELARQILDESGYTAMLQAERTAESAGRLENLSELARAMEEYETLGAFLEHVS
LVMDNEAQADERKVTIMTIHAAKGLEFDTVFLAGWEEGIFPSQRALDEGGLNSLEEERRL
AYVAITRARKSCIILHAANRRIYGQWTSSIPSRFVGELPPEHVEEESSMSGGASLWRANW
SERADPFANVQRGTGRGPGWQRAQQSGQFMKEPVRIVEARASAVSLGNKGRDDMSVGLRV
FHQKFGYGTVAEIEGNKLEIDFETTGRKRVMDSFVQPA
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgcctgctccctcgcccgacgatcccgcctatcttcaggggctgaacgaaccc
cagcgggaggccgtgctctcgaccgaggggccggtgctggtgctggcgggcgccggcacg
ggcaagacggcggcgcttaccgcccgcctcgcccatctgatcgccacgcggcgggcctat
ccttccgaaatccttgccgtcaccttcaccaacaaggcggcgcgggaaatgcgggaacgc
gtcggccgcatgatcggcccggcggtggagggcatgccctggctgggcactttccacgcc
atcgccgcgaagatgctgcgccgccatgccgaactggtggggctgcaatccaacttcacc
atcctcgacacggacgaccagcttcgcctgatgaagcagcttatccaggcggagggcatc
gacgaaaagcgctggcccgcccgccagctcgccggcctcatcgaccagtggaagaacaag
ggcctgaccccggaggagatcggcgcgggcgagagcgagggctatgccaacggcaggggg
cagaagctctatgccgcctatcaggcgcgtcttcgggacgtgaatgcctgcgatttcggg
gacttgctgctgcatgttctgacgatattgaaacgtcatcgggatgtgctggaaagctat
cagcagcgcttccgctatatcatggtggacgaatatcaggacaccaactccagccagtat
ctgtggctgcgcctgctcgcccaaagcagcaagaacatttgctgcgtcggcgatgacgac
cagtccatctattcatggcgcggggccgaagtcgccaatatcctgcggttcgaaaatgat
tttccgggcgcgaagatcatccggctggagcagaattaccgttcgaccccgcatatattg
ggcgcggcgtcaggggtgatcgcggaaaacggcaatcgcctgggcaagacgctatggacc
gacatcgacgtgggcgaaaaggtccgcgtcatcggcgtgtgggacgggccggaggaagcg
cggcgcgtgggcgaggagatcgaatcgatcgaacgcggcggccgatcgctggacgaagtg
gccatcctcgtccgcgcccagcaccagacccgcgagttcgaagaccgcttcatccagatc
ggcctgccctatcgcatcgtcggcggtttccgcttctatgagcgcgccgaaatccgcgac
gcgctggcctatctgcgcctcgtcaaccagcccgccgacgacctggcgttcgaacggatc
gtcaatgtccccaagcgcggcctgggcgacaaggcggtggaaaagctgcaccgacttgcc
cgcacggagggcgttccgctggccctcgccgccgcccgcatcctcgacacggacgagatg
acgccgcaggcccgccgcagcctgggcgcctttatcggcgatctcgcccgctggcgggac
cgcgccgcgcagcttccccatgccgaactcgcccggcagatattggacgagagcggctac
accgccatgctccaggccgaacggaccgccgaaagcgcggggcggctggagaacctgagc
gaactcgcccgcgccatggaggaatatgagacgctgggggccttcctggagcatgtgagc
ctcgtcatggacaatgaggcgcaagcggacgagcgcaaggtcacgatcatgaccattcac
gccgccaaggggctggagttcgacaccgtctttctggcggggtgggaagaaggcattttc
ccttcccagcgcgcccttgacgaaggcggcctcaacagcctggaggaggaacgccgcctt
gcctatgtcgcgatcacgcgggcgaggaaatcctgcatcatcctgcacgccgccaaccgg
cgcatctatggccagtggaccagttccatcccctcgcgcttcgtcggggaactgccgccc
gaacatgtggaggaggaaagcagcatgtccggcggcgcctcgctctggcgcgccaactgg
tcggagcgagccgatcccttcgccaatgtccagcgcggcacgggacgcggccccggctgg
cagcgcgcccagcagagcgggcagttcatgaaggaacccgtccggatcgtggaagcccgc
gcatcggccgtatcgctcggcaacaagggccgcgacgacatgagcgtcggtctgcgcgtc
ttccaccagaaattcggatacggcaccgtggcggagatcgagggcaacaagctggagatc
gacttcgaaacgacagggcggaagcgggtaatggacagcttcgtgcagcctgcctag
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