KEGG   Sanguibacter keddieii: Sked_13060Help
Entry
Sked_13060        CDS       T01214                                 

Definition
(GenBank) DNA ligase D/DNA polymerase LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ske  Sanguibacter keddieii
Pathway
ske03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ske00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Sked_13060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ske03400]
    Sked_13060
Enzymes [BR:ske01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Sked_13060
DNA repair and recombination proteins [BR:ske03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Sked_13060
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ACZ21247
UniProt: D1BEG9
LinkDB All DBs
Position
complement(1465983..1468541)
Genome map
AA seq 852 aa AA seqDB search
MPDDDTGAPSRAAQRETVTVDGHRVTLTNLSKVIYPETGTTKADVLAYLAAVAQPFVAHV
TGRPATRKRWVHGTGGPVFFQKNLEDSAPTWVHRRDIQHSDHVNTYPLVDDLATLTWLGQ
VAALEIHVPQWRFGRTGVEHRPDRLVLDLDPGPGTGLDECVQVALWAREILTGMDLEPFP
VTSGSKGIHLYAALDGAHDSDAVSAVAHELARALQADHPDLVVSDMKKSLREGKVLVDWS
QNNRNKTTISPYSLRGRDRPYVAAPRSWAELEAGGLTHLEADEVVARLERDGDLLAPLLT
GGHAALEPTTARMAGFERTDRLEVYRSKRDASKTPEPVPEASPTEASPGDGPAGSADPAA
PTFVIQEHHARALHYDFRLEHDGVLVSWALPKGEPVDTTHNRLGVQTEDHPLEYGSFEGT
IPRGEYGAGTVSIWDRGTYDLHKWREGEEVIVTLHSDGSGGTDRGSRRIALIHTAHTGGG
TSWLVHRMKDDGHSGGGAAGASGEEDDKAEVAGSAPGEGSASSSGSRDRPLTPMLATPGT
VDDLDEDDWAFEMKWDGIRAVATVVADRDGSPGSVRLTSRNGNDLTASYPELAALSGCVA
EDVVLDGEIVALDQGGRPSFGRLQSRMNLTARRDVAAAQKAQGVVYMAFDLVERSGRRTT
RVGYDGRRAALEELVTESGPVHVPPAFTSDAASALAASKELGLEGIVAKRRSSTYRPGRP
AHTWVKVKHVQTQEVVVVGWRTGNGARAQTLGSLLVAVPDATGTLRYAGRVGTGFTDATL
ERLATELARNPRQTPPVDDVPAADAGDAHWVRADRVGEVAHAGWTDQGRLRHPVWRGWRS
DKAPGDVVREDA
NT seq 2559 nt NT seq  +upstreamnt  +downstreamnt
gtgccagacgacgacacaggggcgcccagtcgcgccgctcagcgcgagacagtcaccgtc
gacgggcaccgggtgacgctgacgaacctgtcgaaggtgatctacccggagaccgggacc
accaaggccgacgtgctggcctacctggcggccgtcgcgcagcccttcgtggcgcacgtg
accgggcgcccggcgacccgcaagcggtgggtgcacggcaccggcgggccggtgttcttc
cagaagaacctcgaggactccgcccccacgtgggtgcaccggcgggacatccagcactcc
gaccacgtcaacacgtacccgctggtcgacgacctcgcgacgctcacgtggctcggtcag
gtggcggcgctcgagatccacgtgccgcagtggcggttcggccggaccggggtcgagcac
cggcccgaccgcctggtgctcgacctcgaccccgggcccggcacagggctcgacgagtgc
gtgcaggtggcgctgtgggcacgggagatcctcaccggcatggacctcgagcccttcccc
gtgacgagcgggtccaaggggatccacctctacgcggccctggacggagcgcacgactcc
gacgcggtgagcgccgtcgcgcacgagctggcccgtgcgctccaggccgaccaccccgac
ctcgtggtgtccgacatgaagaagtcgctgcgcgagggcaaggtgctcgtcgactggtcg
cagaacaaccgcaacaagacgaccatcagcccgtactcgctgcgcggccgggaccgcccc
tacgtcgccgcaccgcgctcgtgggcagagctcgaggcgggcgggctcacccacctcgag
gccgacgaggtggtcgcccggctcgagcgcgacggtgacctgctcgccccgctgctcacg
ggcggtcatgccgcgctcgagccgaccactgcgcggatggcgggcttcgagcggacggac
cggctggaggtctaccggtcgaagcgcgatgcgtcgaagacccccgagccggtccctgag
gcctctccgaccgaggcgtcccccggcgacgggccggccggctctgcggacccggccgcc
ccgaccttcgtcatccaggagcaccacgcccgggctctgcactacgacttccggctcgag
cacgacggcgtgctcgtcagctgggctctgcccaagggcgagccggtggacacgacgcac
aaccggctcggcgtccagacggaggaccaccccctcgagtacgggagcttcgaggggacg
atcccgaggggcgagtacggcgcgggcaccgtgtcgatctgggaccgcggcacctacgac
ctgcacaagtggcgcgagggcgaagaggtcatcgtcacgctgcacagtgacggctcgggc
ggcacagaccgcgggtcgcggcgcatcgcactcatccacacggcgcacaccgggggtggg
acgtcgtggctcgtgcaccggatgaaggacgacgggcactcaggcggcggggctgcaggc
gcgtcgggcgaggaggacgacaaggcggaggtcgccgggtctgcgcccggggagggcagc
gcctcgtcgtccgggtcgcgcgaccgcccgctcaccccgatgctcgcgacgccggggacc
gtcgacgacctcgacgaggacgactgggccttcgagatgaagtgggacggcatccgcgcg
gtcgccaccgtggtggccgaccgtgacggctcccccgggtcggtccggttgaccagccgc
aacggcaacgacctcacggcgtcctaccccgagctcgcggccctgtccgggtgcgtggcc
gaggacgtggtgctcgacggtgagatcgtcgcgctcgaccagggtggccgcccgagcttc
ggccggctgcagagccggatgaacctcacggcacgacgcgacgtcgccgccgcgcagaag
gctcagggtgtcgtgtacatggccttcgacctcgtcgagcggtcggggcgccggaccacg
cgggtcggctacgacggccgccgggcggctctcgaggagctcgtgacggagtcggggccg
gtgcacgtaccaccggccttcacctccgacgcggcctcggccctcgcggccagcaaggag
ctcgggctcgagggcatcgtcgccaagcgccggtcgagcacctaccgcccgggccgtccg
gcgcacacctgggtcaaggtcaagcacgtgcagacacaggaggtggtggtcgtcggctgg
cgcaccggcaatggggcgcgggcccagaccctcggctccctgctggtcgccgtgcccgac
gccacggggacgctgcgctacgccggacgcgtcggcaccgggttcaccgacgcgacgctc
gagcgtctcgcgaccgagctggcccggaacccccgccagacccctccggtcgacgacgtc
cccgcggccgacgcgggcgacgcgcactgggtccgggccgaccgggtgggcgaggtcgcg
cacgccgggtggacggaccaggggcggctgcgccaccccgtgtggcgcgggtggcgcagc
gacaaggcgccgggcgacgtggtccgcgaggacgcctga

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