Sanguibacter keddieii: Sked_24500
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Entry
Sked_24500 CDS
T01214
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K05522
endonuclease VIII [EC:3.2.2.-
4.2.99.18
]
Organism
ske
Sanguibacter keddieii
Pathway
ske03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sked_24500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ske03400
]
Sked_24500
Enzymes [BR:
ske01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Sked_24500
DNA repair and recombination proteins [BR:
ske03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Sked_24500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
zf-FPG_IleRS
Fapy_DNA_glyco
Motif
Other DBs
NCBI-ProteinID:
ACZ22362
UniProt:
D1BJV3
LinkDB
All DBs
Position
complement(2730185..2731240)
Genome browser
AA seq
351 aa
AA seq
DB search
MPEGHTVHRLARTFGEVFGGATVEVSSPQGRFAAGAALLDGLVLHSAEAVGKQMFLGFGP
ADHLPTAEGLADDLRWLRVHLGLYGSWTFAADGSTQVAHAIGAPRKRVGERETVLEAGTP
GNVVAPTTGLDQHDPDGPEPWDPPDPRGAVRARILSEHAVADLTGPTACEVVSPDAALAV
QRRLGPDPLRGDADPERFVAAVRRSRSAVGLLLMNQDVVAGVGNIYRAEVLFRAEQSPTT
PGRDVPAEVLRAMWDDLVVLMADGAAIGAIVTTRPGDRGDGAHPADEKAPGRRRVRQNTD
AEPGAVPRDESFYVYQRDGQPCRVCRTEVARAEMAGRNLFWCPTCQRDDRR
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgagggccacaccgtgcaccggctcgcccggaccttcggcgaggtcttcggcggg
gcgaccgtcgaggtctccagcccgcaggggcgcttcgccgccggggccgccctcctcgac
ggtctcgtgctgcactccgccgaggcggtcggcaagcagatgttcctcgggttcggcccg
gccgaccacctgcccaccgccgagggcctcgccgacgacctccgctggttgcgggtgcac
ctcggcctctacggctcgtggaccttcgcggccgacggcagcacccaggtcgcgcacgcc
atcggcgcaccccgcaagcgcgtcggcgagcgcgagaccgtcctcgaggccggcacgccc
gggaacgtcgtcgcgcctacgaccggtctagaccagcacgacccggacgggcccgagccc
tgggacccgcccgacccgcgcggcgcggtgcgagcacggatcctgtccgagcacgccgtc
gccgacctcaccgggcccaccgcctgcgaggtggtctcgcccgacgccgcgctcgcggtc
cagcgccgcctgggtccggacccgctgcgcggcgacgccgacccggagcggttcgtcgca
gcggtccggcgctcgcgctcggctgtcggcctgctgctgatgaaccaggacgtggtcgcc
ggggtgggcaacatctaccgcgccgaggtgctgttccgtgcagagcagtcgccgaccacg
ccgggacgcgacgtgccggccgaggtcctgcgcgcgatgtgggacgacctcgtcgtgctc
atggccgacggtgcggcgatcggggccatcgtcacgacgcgaccaggagaccgcggagac
ggggcgcaccctgccgacgagaaggccccggggcgtcggcgcgtgcgccagaacaccgac
gccgaacccggggccgtcccgcgcgacgagtccttctacgtgtaccagcgggacggccag
ccctgccgtgtgtgccgcaccgaggtcgcccgtgccgagatggcaggccggaacctcttc
tggtgcccgacctgccagcgcgacgaccggcgctga
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