Shewanella khirikhana: STH12_00277
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Entry
STH12_00277 CDS
T06711
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
skh03009
]
STH12_00277 (dbpA)
Enzymes [BR:
skh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
STH12_00277 (dbpA)
Ribosome biogenesis [BR:
skh03009
]
Prokaryotic type
rRNA helicases
STH12_00277 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Helicase_C_2
AAA_19
AAA_22
DUF5615
YlmH_RBD
Motif
Other DBs
NCBI-ProteinID:
AZQ09429
UniProt:
A0A3Q9E691
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All DBs
Position
complement(336337..337740)
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AA seq
467 aa
AA seq
DB search
MSNSDLQPSLAFSTLKLKPELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGK
TAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMG
PQVGSLEHGAHIIVGTPGRIVDHLERGRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIAN
APRERQTLLFSATFPEQIQSIAQQVMYKPVMVKVAVTHEKSTIAQHFFHLEDDSARMQAL
RLLLLEHKPESAVVFCNTKRETQKVADELSNAGFSVLALHGDLEQRDRDETLLQFANKSA
CVLVATDVAARGLDIDALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAFTFYNDKDGYK
MALLEEYLERDIQSEPLPSSSLLGKTPQAPTMITLQIDGGKKDKLRPGDILGALTGQNGI
EGGEVGKILVTDYRAYVAVNRKVAKKALGKITSGRIKGKSYRAWLMK
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaattcagatctccagccgtcactggctttctccacccttaagcttaaacccgaa
ctgcttgagaacctgtcctccatgggctaccacgagatgacccccattcaggcccagagt
ctgccggccatcctggcgggtgaggatgtgattggtcagggcaaaaccggctcgggtaaa
accgccgcctttgggctcgggctactgaacaagctggatgtgaagcgttttcgcattcaa
accctggtgctgtgcccaacccgcgagcttgccgatcaggtagcgcaggaaatccgcacc
ctcgcccgtggcatccacaacgtgaaagtgcttaccctgtgcggcggcgtgcccatgggg
ccacaggtgggttcgcttgagcatggcgcccatatcattgtggggacgccggggcggatt
gtggaccatctggagcgcggccgtctggatttgagcaaccttaatatgctggtgctcgat
gaagccgaccgcatgctggaaatgggctttcagcctcagctggatgcaattattgcaaac
gccccgcgcgagcgccaaaccctgctgttcagcgcgaccttccccgagcaaattcagtct
attgcccagcaggtcatgtacaagccggtaatggtaaaagtggcagtcacccacgagaag
agcaccattgcccagcactttttccatctggaagacgatagcgcgcgaatgcaggcactg
cgactgttgctgcttgagcataagccagagagcgccgtggtgttctgtaataccaagcgc
gaaacccaaaaggtggccgatgagctcagcaatgccggtttcagcgtgctggcgctgcat
ggtgacctggagcagcgcgaccgcgatgaaaccctgctgcagtttgccaacaagagcgcc
tgcgtactggtggccactgacgtagccgcccgaggtttggatatcgatgccctcgatgcg
gtattcaactaccacgtggcccacgacaccgaagtgcacattcaccgcattggccgcacc
ggccgcgctggcagcaagggcgccgccttcaccttctataacgacaaagatggctacaag
atggcgctgctggaagagtatctggagcgtgacattcaaagcgagccgctgccatcatcg
agcctactgggtaaaacgccccaggcgccaaccatgatcaccctgcaaatcgatggcggt
aaaaaggataagctgcgccccggcgatatcctcggtgccctaaccggccagaacggtatc
gaaggcggtgaggtgggcaagattttagtgaccgactaccgcgcctatgtggcggtgaac
cgtaaggttgccaaaaaggcactcggtaaaatcacctctggccgcattaaaggcaagtcg
taccgcgcctggctgatgaagtaa
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