Shewanella khirikhana: STH12_04042
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Entry
STH12_04042 CDS
T06711
Gene name
murD
Definition
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
skh
Shewanella khirikhana
Pathway
skh00471
D-Glutamine and D-glutamate metabolism
skh00550
Peptidoglycan biosynthesis
skh01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00471 D-Glutamine and D-glutamate metabolism
STH12_04042 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
STH12_04042 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
skh01011
]
STH12_04042 (murD)
Enzymes [BR:
skh01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
STH12_04042 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
skh01011
]
Precursor biosynthesis
Amino acid ligase
STH12_04042 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AZQ13076
UniProt:
A0A3S9LC39
LinkDB
All DBs
Position
4578705..4580036
Genome map
AA seq
443 aa
AA seq
DB search
MGLPLDKPHTHIVLGLGATGLSVVRFLTGKGIAPLVMDSRRQPPGMETLAAEFPDVPLVS
GGFDCRHLVQAQQIIISPGIAVDTPEVRAAMDMGIEVIGDVELFARELAERAPCVLAITG
SNGKSTVTTLVGDMAAADGKKVAVGGNIGVPALDLLSQSAELYVLELSSFQLETTHSLKC
IAATCLNISEDHMDRYADLEAYRQAKLRIYPQSKLSVFNRDDLATEPNDPCHTTSFGLGI
PEGDEWGLMDGKVYHGTSEIMNLLDVALIGAHNHANLLAAMALCEAAGISREAMVKVARE
FTGLSHRCELVANHDNIAWVNDSKATNVGATAAALNGLRDHLGDIILIAGGDGKGADFEP
LRIAFASVTHLITLGRDGDKIAELKEGAIRVANMAEAVDKAKALANPGDIVLLSPACASL
DMYANFMARGDDFRANVERVYGE
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgccgctggataagccacatacacacatagtgctgggcctgggtgccacaggg
ctgtctgtggtgcgctttttgactggcaaaggcattgcgccgctggtgatggacagtcgt
cgccagccgcccggtatggagactctggctgccgaatttccggatgtgcccctggtgagt
ggcggctttgattgccgtcatctggtacaggcgcagcagattatcatcagcccgggcatt
gcggtggatacccccgaggtgcgcgctgccatggacatgggcatcgaagtgattggtgat
gtggagctgtttgcccgggaactggccgagcgtgcgccctgcgtgctggcgattaccggc
tccaatggtaaatccacagtgaccaccctggtgggcgacatggctgcggccgacggtaaa
aaagtggccgtgggcggcaacataggtgtgcctgcgctggatttgctgtctcagtctgcc
gagctttatgtgcttgagctgtcgagctttcagctggaaacgacccacagcctcaagtgc
attgccgccacctgtctgaacatcagcgaagaccatatggacagatacgccgatctggaa
gcctatcgtcaggccaagttgcggatctatccgcagtcaaaattgagtgtgttcaaccgt
gacgatctggccaccgagccgaacgatccctgtcacaccaccagtttcggccttggcatt
cccgaaggggatgaatgggggctgatggatggcaaggtctatcacggcaccagtgaaatc
atgaacttgctggatgtggccctgattggtgcccacaaccatgccaacctgctggcggcc
atggcgctgtgcgaagcggccggtatttcccgcgaggccatggtcaaagtggcccgtgag
ttcacaggtctcagtcatcgctgcgagctggtggcgaaccacgacaacatcgcctgggtc
aacgactccaaagccaccaacgtaggcgccacagcggcggcgctgaatggcctcagggat
cacctgggcgacatcattcttatcgccggtggcgatggcaagggcgccgattttgagccc
ttgcggatcgcgtttgcctcggtgacgcaccttattactctggggcgcgacggcgacaag
attgccgagcttaaagaaggcgcgattcgtgtggccaacatggccgaggcggtggataag
gccaaggcgcttgccaatcccggtgacatagtgctgttgtcgccagcctgcgccagcctg
gatatgtatgccaactttatggcccggggtgatgacttcagggccaatgtggagcgggtc
tatggcgagtga
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