Skermanella sp. TT6: IGS68_07640
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Entry
IGS68_07640 CDS
T07020
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
skt
Skermanella sp. TT6
Pathway
skt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
skt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IGS68_07640 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skt03021
]
IGS68_07640 (rpoC)
03400 DNA repair and recombination proteins [BR:
skt03400
]
IGS68_07640 (rpoC)
Enzymes [BR:
skt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IGS68_07640 (rpoC)
Transcription machinery [BR:
skt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IGS68_07640 (rpoC)
DNA repair and recombination proteins [BR:
skt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IGS68_07640 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QQP91074
LinkDB
All DBs
Position
1629663..1633856
Genome browser
AA seq
1397 aa
AA seq
DB search
MNELMNIFGQVQGPQSFDQIRISIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLKDLERVLYFENYVVVEPGLTPLKLHQLLGEEEYISAQEEYGDDAFEAK
IGAEALGHMLSQIDLEQERITCRDELRETNSEAKRKKLVKRLKLIEAFQESGSRPEWMIL
NVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYAKLELYGMASTIKAAKRMVEKERPEVWDILEEVIREH
PVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYITMDRAGEKGEGMAFANIGEIQQALDA
KAVSLHARVKARYKTIDDEGKPITVRVETTPGRMLLSEILPRNKMVPFSVINRLLTKKEI
TNVIDLVYRHCGQKETVIFADRLMKLGFGHACRAGISFGKDDMVIPPEKQALVADAQERV
KEYEQQYLDGLITQGEKYNKVVDVWSETTEKVANAMMDVIKKDRPGQGINSVYMMAHSGA
RGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDAIIVEVDCGTTDGITVKAVIEGGEVIAPLADRILGRTTAVELKN
PLTGEIVVDAGALIDEALVDKIEQAGIDSVLIRSVLTCHTRDGVCAKCYGRDLARGTLVN
VGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSSVEAAFDATLQIKNRNVVLNSE
GVPVVMGRNCELVLVDDQGREKARHRIPYGAKLLAAEDEKVERGRKLAEWDPYTLPIITE
REGIANYVDLIEGVSVREVMDEATGISSKVVVDWRQQPRGADLRPRITLRDENGDVVKLP
NGMEARYYMSVDAILSIENGARVRAGDVLARIPREGSKTRDITGGLPRVAELFEARRPKD
FAIISETDGRVEFGKDYKTKRRIVVVPNDESEQPKEYLIPKGKHISVQEGDYVQRGDLLM
DGNPVPHDILAVMGVEALAAYLTNEIQEVYRLQGVKINDKHIEVIVRQMLQKVEIEDAGD
TTFLVGEQVDRQEFDIENEKVIAEAGADGVQLRPAKARPVLQGITKASLQTKSFISAASF
QETTRVLTEAAVSGRVDNLDGLKENVIVGRLIPAGTGSVVNRLKQIAAERDRETTPIEHD
GSESVMPGLPESRPNVA
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagttgatgaatattttcggccaggtccagggcccgcagagcttcgatcagatc
cgtatctcgatcgcgagccccgagcggatccgctcctggtccttcggcgagatcaagaag
ccggagaccatcaactaccgtaccttcaagccggaacgcgacgggctgttctgcgcccgt
atcttcggtccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaagtac
cgcggcatcatctgcgagaagtgcggcgtcgaggtcaccctgtccaaggtgcgccgcgaa
cgcatgggccatatcgagctggcctcgccggtggcgcacatctggttcctgaagtccctg
ccgagccgcatcggcctgctgctcgacatgacgctgaaggatctggagcgggtcctgtat
ttcgagaactacgtcgtggtcgagcccggcctgaccccgctgaagctccaccagcttctc
ggcgaggaggagtatatctccgcccaggaagagtacggcgacgacgcgttcgaagccaag
atcggcgccgaggcgctgggccacatgctgtcccagatcgacctggagcaggagcgcatc
acctgccgcgacgagctgcgggagaccaactccgaggcgaagcgcaagaagctggtcaag
cggctgaagctgatcgaggcgttccaggaatccggctcccggccggaatggatgatcctg
aacgtcatcccggtcatcccgcccgagctgcgtccgctggtcccgctcgacggcggccgg
ttcgcgacctcggacctgaacgacctgtaccgccgcgtgatcaaccggaacaaccgcctg
aagcggctgatcgagctgaaggcgccggacatcatcgtgcgcaacgagaagcgcatgctg
caggaggccgtcgacgccctgttcgacaacggccgccgcggccgggtcatcacgggcgcc
aacaagcgcccgctgaagtcgctgtccgacatgctgaagggcaagcagggccggttccgt
cagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtggtcggcccg
gagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccc
ttcatctacgccaagctcgagctgtacggcatggcttcgaccatcaaggcggcgaagcgc
atggtcgagaaggagcggccggaggtctgggacatcctcgaggaggtcatccgcgagcat
ccggtcctgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggcgttcgagccg
acgctgatcgagggcaaggcgatccagctgcacccgctggtctgcaccgccttcaacgct
gacttcgacggcgaccagatggcggtccacgtgccgctgtcgctggaagcccagctcgaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgtgcccagccaggacatcgtcctgggcctgtactacatcacgatggaccgggccggc
gagaagggcgagggcatggccttcgccaatatcggcgagatccagcaggcgctggacgcc
aaggcggtcagcctgcacgcccgcgtcaaggcccgctacaagacgatcgacgacgagggc
aagccgatcaccgtgcgggtggagacgaccccgggccgcatgctgctgtccgagatcctg
ccgcgcaacaagatggtccccttctcggtcatcaaccgcctgctgaccaagaaggagatc
accaacgtcatcgatctggtctaccgccattgcggccagaaggagacggtgatcttcgcc
gaccggctgatgaagctgggcttcggccatgcctgccgcgccggcatctcgttcggcaag
gacgacatggtcatcccgccggagaagcaagcgctggtcgccgacgcgcaggagcgggtc
aaggagtacgagcagcagtacctggacggcctgatcacccagggcgagaagtacaacaag
gtcgtcgacgtctggtcggaaaccaccgagaaggtggccaacgccatgatggacgtgatc
aagaaggaccgtccgggccagggcatcaactcggtctacatgatggcgcattccggtgcc
cgtggttcggccgcccagatcaagcagctggccggcatgcgcggcctgatggccaagccg
tcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaaggcctgaccgtgctg
gagtacttcaactccacccacggtgcccgtaagggtctggccgacaccgccttgaagacg
gcgaactcgggctacctgacccgccgcctcgtggacgtggcccaggacgcgatcatcgtc
gaggtcgattgcggcactaccgacggcatcaccgtcaaggccgtgatcgagggcggcgag
gtcatcgctccgctggcggaccgcatcctgggccgcaccacggccgtcgagctgaagaac
ccgctgaccggcgagatcgtcgtggacgcgggcgctctgatcgacgaggcgctggtggac
aagatcgagcaggccggcatcgactcggtgctgatccggtctgtcctgacctgccacacc
cgcgacggcgtgtgcgccaagtgctacggccgcgacctggcccgcggcaccctggtgaat
gtcggcgaggcggtcggcgtcatcgcggcgcagtcgatcggggagccgggtacccagctg
accatgcgtaccttccacatcggcggcgccgcccagcgcggtgccgagcagtcctcggtc
gaggcggcgttcgacgcgaccctccagatcaagaaccgcaacgtggttctgaactccgag
ggcgtgccggtcgtcatgggacggaactgcgagttggtgctggtggacgaccagggccgc
gagaaggcgcgtcaccgtattccctacggtgccaagctgctggcggccgaggacgagaag
gtcgagcgcggccgcaagctggccgagtgggacccgtacaccctgccgatcatcaccgag
cgcgagggtatcgccaactacgtcgacctgatcgagggcgtgtccgtccgcgaggtcatg
gacgaggcgaccggtatctccagcaaggtggtggtggactggcgccagcagccccgcggt
gccgacctccgtccgcgcatcaccctgcgggacgagaacggcgacgtggtcaagctgccg
aacggcatggaagcgcgctactacatgtcggtcgacgccatcctgtcgatcgagaacggc
gcccgcgtgcgggcgggcgacgtgctggcccgcatcccgcgcgaaggctccaagacgcgc
gacatcaccggcggtctgccgcgcgtggccgagctgttcgaggcccgccgcccgaaggac
ttcgcgatcatctcggagaccgacggccgggtcgagttcggcaaggactacaagaccaag
cgccggatcgtggtcgttcccaacgacgagagcgagcagcccaaggaatacctgatcccc
aagggcaagcacatctcggtccaggaaggcgactatgtccagcgcggcgacctcctgatg
gacggcaaccccgtgccgcacgacatcctggcggtcatgggcgtggaggcgctggccgcc
tacctcaccaatgagatccaggaggtctaccggttgcagggcgtgaagatcaacgacaag
cacatcgaggtgatcgtccgccagatgctgcagaaggtcgagatcgaggacgccggcgac
accaccttcctggtgggcgagcaggtggaccgtcaggagttcgacatcgagaacgagaag
gtcatcgcggaagccggcgccgacggcgtccagcttcgtccggccaaggcgcgccccgtc
ctgcagggcatcaccaaggcctcgctccagaccaagtcgttcatctccgccgcttcgttc
caggaaaccacccgcgtgctgaccgaggctgccgtctcgggccgcgtggacaacctggac
gggctgaaggagaacgtgatcgtcggtcgcctgatcccggccggtaccggctcggtggtc
aaccgcctgaagcagatcgccgccgagcgcgaccgggagaccaccccgatcgagcacgac
ggcagcgagagcgtcatgccgggcctgccggaaagccggcccaacgtggcgtaa
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