Sulfurimicrobium lacus skT11: SKTS_05360
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Entry
SKTS_05360 CDS
T06796
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
slac
Sulfurimicrobium lacus skT11
Pathway
slac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SKTS_05360 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slac03021
]
SKTS_05360 (rpoC)
03400 DNA repair and recombination proteins [BR:
slac03400
]
SKTS_05360 (rpoC)
Enzymes [BR:
slac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SKTS_05360 (rpoC)
Transcription machinery [BR:
slac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SKTS_05360 (rpoC)
DNA repair and recombination proteins [BR:
slac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SKTS_05360 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
BCB25650
UniProt:
A0A6F8V8K0
LinkDB
All DBs
Position
554228..558427
Genome browser
AA seq
1399 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMALRDIERVLYFEAYVVTDPGMTPLNRCQLLTEDDYLAKVEEYGDEFSASM
GAEGVRALLRGIDINTEVEKLHKDLAATGSDTKIKKIAKRLKVLEAFQKSGIKPDWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFHKLEVLGLATTIKAAKRMVEEEGPEVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEC
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTREAINAKGEGMFFADAAEISRAYESR
QVDLHAKITTRIKEYTLGEDGEKIEKITRYETTVGRALLAELLPPGLPFSVVNKPLKKKE
ISKLINASFRRSGLRETVILADKLMYTGFTYAARAGISICVDDMLVPTQKEGILAAAESE
VKEIEMQYSSGLVTQGERYNKVVDIWGRAGDVVAKAMMDQLGSEKVIDREGKEVKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTSNGVALKALVEGGEVVEALRERIL
GRSVAADVVHPETGETVFEAGTLLDEDAVEKIESLGVDEVKVRTPLTCDTRFGLCARCYG
RDLGRGMLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVTSQIEIKSNGTLRF
ESAMRYVTNTKNEAIVISRSGEVIIADDNGRERERHKVPYGATLLSMDGTVVKAGHVLAM
WDPHTRPIITEYAGKVRFENVEEGVTVAKQIDEVTGLSTLVVIDPKRRGTSQSKGLRPQV
KLLDENGVEVKIAGTELPVNITFHVGSIITVKNGQDVNVGEVLARIPQETSKTRDITGGL
PRVAELFEARSPKDAGLLAEVTGTISFGKDTKGKQRLVITDLDGIAHEFLISKDKHVTAH
DGQVVNKGESIVDGPADPHDILRLLGVESLARYIADEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVTISDSGETRFIQGEQVERADVLDANEAAVAEGKQPAQYTYMLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHNTRRNQKLGLDMG
ENVLAEAFPETVQDDEQPA
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatttgttcaaacaggtgactcaggaagaagagttcgacgccatc
aagattggcctcgcttctcccgagaaaatccgttcctggtcctacggtgaagtgaagaag
ccggagaccatcaactatcgtaccttcaagcccgaacgcgacggcttgttctgcgccaag
atctttggcccggtcaaggattacgaatgcctgtgcggcaagtacaagcgcctcaagcat
cgcggcgtgatttgcgaaaaatgcggcgtggaagtgaccttgtccaaggttcgccgagag
cgcatgggccacatcgagctggcttcgccggttgcccacatctggttcctcaagtccctg
ccttcccgtctgggcatggtgctggacatggcgttgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtgaccgacccgggcatgaccccgctgaaccgttgccagctgctc
accgaagacgattatctggccaaggtggaagaatacggcgacgaattctccgccagcatg
ggtgcggaaggcgtgcgcgcactgttgcgcggcatcgacatcaataccgaagtcgagaag
ctgcacaaggacctcgccgctactggctccgacaccaagatcaagaagatcgccaagcgc
ctcaaggtgctggaagcattccagaaatccggcatcaagccggattggatgattctcgaa
gtcctgccggtgttgccaccggaattgcgtcccctggttcccctggacggcggccgcttt
gcgacttccgacctgaatgacctgtatcgccgcgtgatcaaccgcaacaaccgtttgaag
cgcctgctggaactgaaagcgccggaaatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtggattcgctgctcgacaacggtcgccgcggcaaggccatgaccggcgccaac
aagcgcccgctgaagtcccttgccgacatgatcaagggcaagggcggccgtttccgtcag
aacctgctgggcaagcgcgtggactattccggtcgttccgtgatcgtggtcggtccgcag
ctcaaattgcaccagtgcggtttgcccaagaaaatggcgctcgagctgttcaagcccttc
attttccacaaactcgaagtgctcggccttgccaccaccatcaaggcagcgaagcgcatg
gtcgaagaggaaggtccggaagtttgggatatcctggaagacgtgatccgcgaacatccg
gtcatgctcaaccgcgctccgaccctacaccgccttggtattcaggcattcgagccggtc
ctgatcgaaggcaaggcgattcagttgcatccgctggtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgttcacgtgccgctgtcgctggaagcgcagatggagtgc
cgcaccctgatgctggcttccaacaacgtcctgtctcccgccaacggcgagccgatcatc
gtgccgtcgcaggatatcgtgctgggcttgtattacatgacgcgcgaggccatcaacgcc
aagggcgaaggcatgttctttgcggatgcggcggagatttcccgtgcctacgagtcgcgc
caggtcgatctgcacgccaaaatcaccacgcgcatcaaggaatatacgctgggcgaggac
ggtgaaaagatcgaaaaaatcacccgttacgaaactaccgtcgggcgtgccttgctggca
gaacttctgccgccgggcctaccgttctcggtggtcaacaagccgctgaagaagaaagag
atttccaagctcatcaacgccagcttccgccgttccggcttgcgcgagacggttatactg
gcggacaagctgatgtatacgggcttcacctatgcggcacgcgccggcatctccatctgc
gtcgacgacatgctggttccgacgcagaaggaaggtatcctggcggctgccgagtcggaa
gtgaaagaaatcgagatgcagtactcctccggtttggtcacgcagggcgagcgctacaac
aaggtggtggatatctggggccgcgccggcgacgtggtggccaaggccatgatggatcag
ctcggcagcgagaaggtgatcgaccgtgaaggcaaggaagtcaagcaggagtccttcaac
tccatctacatgatggccgactccggcgcccgtggttctgcggcacagattcgccagctg
gccggtatgcgcggcctgatggccaagccggacggctccatcatcgaaacgccgattacg
gcgaacttccgcgaaggcctgaacgtgctgcagtacttcatttcgacgcacggcgcgcgt
aagggtcttgccgacacggcgctaaaaaccgccaactccggttacctcacccgccgcctg
gtcgacgtgacccaggatctggtggtgaccgagcaggattgcggtaccagcaacggcgtg
gcactgaaagcactggttgaaggcggcgaagtggtcgaggccctgcgtgaacgaattctc
ggtcgttcagttgctgccgacgtggtccatccggaaaccggcgaaaccgtgttcgaggcc
ggcacgctgctggacgaggatgctgtcgagaagatcgaatccctgggcgtcgatgaagtc
aaggtgcgcacaccgttgacctgcgatacgcgctttggtctgtgcgcacgttgctatggt
cgcgacttgggtcgcggtatgctggttaacgtcggcgaagcggtgggagtcattgccgcc
cagtccatcggcgaaccgggcacccagctcaccatgcgtaccttccacatcggtggcgct
gcttcacgtgccgctgtgaccagccagatcgaaatcaagtccaatggcacgttgcgcttt
gaatccgccatgcgctatgtaaccaacacgaaaaacgaagccatcgtaatttcccgtagc
ggcgaagtgatcatcgccgatgacaacggtcgcgagcgcgagcgccacaaggtgccatat
ggcgcgacgttgctgtcgatggacggtacggttgtgaaggccggccacgtgctggccatg
tgggacccgcatacccgcccgatcatcaccgagtacgccggtaaggtgcgtttcgagaac
gtcgaggaaggtgttaccgtcgccaagcagatcgacgaagtgaccggcctttccacgctc
gtcgtgatcgacccgaaacgtcgtggcaccagccaatccaagggactacgtccacaggtc
aagctgctcgatgaaaacggtgttgaggtcaagattgccggcactgaactcccggtcaat
attaccttccatgtcggctccatcattaccgtgaaaaatggccaggacgtcaacgtgggc
gaggtgctggcgcgtatcccgcaggaaacgtccaagacacgtgacattaccggcggtttg
ccgcgcgtggccgagttgttcgaagcccgttcgcccaaggatgcaggtttgctggcagaa
gtcactggcaccatttcgtttggcaaggataccaagggcaagcagcgcctggtcattacc
gacctcgacggtattgcacacgagttcctgatttccaaggacaagcacgtgaccgcgcac
gacggccaagtggtcaacaagggcgagtcgattgtggacggcccggctgatccgcacgac
attctgcgcctgctgggtgtggaatcgctggcgcgctacatcgccgacgaagtgcaggac
gtttaccgcctgcagggtgtgaagatcaacgacaagcacatagaagtgatcgttcgtcag
atgctgcgtcgcgtaaccatctcggattccggggagacccgtttcatccagggcgagcaa
gtggaacgcgccgatgtgctggatgccaacgaagcggcagtggccgaaggcaaacagccg
gcgcagtacacctacatgctgctgggtatcaccaaggcttccctgtcgaccgattccttc
atctcggcggcgtccttccaggaaacaacgcgtgtgttgaccgaggcggcgatcatgggc
aagcgcgacgaactgcgcggtctcaaggagaacgttattgttggccgtctcatcccggca
ggaacgggcctcgcataccacaatacgcggcgcaatcagaagctgggactggatatgggg
gagaacgtgctggccgaggcgttccctgaaacggtgcaggacgatgaacaacccgcttga
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integrated database retrieval system
