Seriola lalandi dorsalis (Yellowtail amberjack): 111657451
Help
Entry
111657451 CDS
T06058
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04510
Focal adhesion
slal04512
ECM-receptor interaction
slal04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111657451
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111657451
09142 Cell motility
04820 Cytoskeleton in muscle cells
111657451
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slal04147
]
111657451
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111657451
Exosome [BR:
slal04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111657451
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111657451
Hyaluronan
Extracellular matrix or blood plasma proteins
111657451
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
VWA_CoxE
DUF1194
PrpR_N
Motif
Other DBs
NCBI-GeneID:
111657451
NCBI-ProteinID:
XP_023265397
LinkDB
All DBs
Position
Unknown
AA seq
2513 aa
AA seq
DB search
MSAPKMKGSTGLLFSLILAACSCGIAAQTTVCENVTAADIVFLVDGSSSISPQSFEDIQR
FLHSVIMALDIGPKKVQIGLAQYSDDFHQEFLLKDHKDRKSLLDAVEKLSLRGGITNTGK
AIDLLQKRYFTPAAGSRANHRIPQIAVVITDGVSNDDVIAPAQRLRDKGVIVFAIGVGEA
NVPELESIAVLSPKDFVFTIDNYQALARLRETLLSTVCKSVEALADKYADIFFLVDSGIA
QGPFSMFKSELTKLIKQIPVGASSYRIGLAQYAQDTKVAFLLNSFQTKQETTNGVQSFRL
QPQPYERHNLARALEYANTHFFTKEAGGRAHRGSKQFLVVVTGKDSVGPVDREAHYIKLA
GIRILGMNAGADMRLVNVLSSAGYAFDAPRITLLRDIITSVKKENITEDCKEANVADIVF
IVDESGSIGHDNFHLVRHFLNSIVSSLDVSLNRVRIGLVTYGDSPTAHIYLDTKRGKADI
LQYISVLPYRGGGTNTGAALNFAREKIFIKSRGKRKGSVQQVAVVITDGLSQDSVSDAAI
KLRRDGVTIYSVGIKVDDKSELEAMASHPSHKYVFNVDSFTDLKRLKQDLQKVLCSNIIQ
EVFTESTDKKDIKQACEQKDDADIFFLMDDSGSIGNEDFKDMQKFIIGFIKAFHIGENHV
RIGLVKYSKNPTVVFEPTTYSDGKTIEKAVENILHEGGGTNTGQALEYMKQEIEKAKNTR
GYKVPQYLIVITDGKSQDEVKAPAKDLRDQGLTIFAVGVKESDQKQLVEIAGDSENTFFV
SSFDALTHLKDDIIRTICSPDACKDIPLDIMFLVDSSWSISDEDYLKMKDFIKSIIKKSA
IGQNQVHVGVMQYSTDPQLEFKLDRHYSKDKLLNVIDAMQHIKQNTQTGKAITEVSRYFT
NSQGGRPGLGQRLVIITDGESQDDVKGPAATLRDSGVEIYAIGVGEAKYPQLVELGGSVE
NSFYLSRFDALKELENHLILKLCYDDCKKTQRADIIFLVDGSGSIRQPEFTSMQIFMKSI
VDRTTVGKDQTNFGVIIYANEPHSVFSLEEHSSSKKDVLDAITKVRQPEGLTYTSKALKY
SLQYFGAEHGGRRKKKVPQILMVITDGAATDSDALELSSNELRTNNIQVFSIGIRDASME
QLYTMAGNDKSKVFYVDNFDALEMLHKNISSVLCNTTKPACEKDKADVVFLLDQSSSIGD
ANYSIMINFVEQLVESFDVREEDIRVGVAQFSDIFQDEFHLNKYSNKEDVIAHMKKMKYS
GGETLIGKALHHIKGYFEQSNGSRRFARIPQNLVLITDGESQDDVEEEADILRAMNIEMF
AIGVGDVHDLELLQITGTPERLFNVQNFKSLVKIKQKLIDEFCKEPEEQSAPCSIDIAIG
FDITERNRALGEMLVSGHPKLKTFLPEITSDLASVQGLCCVKPDQPVETKIAYYVFDRNG
RTLYDTNFEHYSEDVVQKVMSHPVSESTFFNTALLNAFKDMFQAKSKANVKVLVIFSDGL
NEDVMKLKQESERLQHSGVSALLIVALERVNDPTQLQEVEFGRGFTDRRPLRIGMPNVGS
TVLKLINTVSDRVCCNVTCKCVGPPGPRGLPGTPSSKGETGQKGQPGFPGEEGVSGERGP
PGPPGPPGLQGCPGVSGLKGSRGISGNRGDNGEEGLDGVDGEQGSTGTDGLKGQRGNAGN
PGIPGIRGQPGLKGDRGLRGDPGEPGNDNNVPGPKGHRGNPGLPGTPGPDGRPGEGGVIG
NPGPDGRRGLPGVKGAPGEPGLSGLPGSPGAAGTQGRRGPDGGPGPKGISGFPGPQGKHG
GPGEPGTPGRHGPNGQKGQPGDPGVKGSPGPRGPRGQPGQDGRDGYGPPGTKGAKGDPGF
PGYPGLLGEDGLNGTKGYPGKKGNDGRDGNSGTPGGPGDPGGLGPKGHMGPRGPPGNSSH
TECQLVNLIRDNCACCSDRSECPVFPTELVFALDMSEEVSETAFEKQRSALLSLLKGIII
SQSNCPRGARVAVVGYSTHTKYLIRFQDYSHINQLTESVKKITRGRTGDRHQLGAAMRFV
GQNVFKRVRAGRMMRKVAVFFTGGPSHDVKDIVTAMMEYRASNILPAVISLQNAPGILRA
MEVDDSRHFIFKVLGENMDIDLRDVKQCAICYDPCKYSERCSFLQKPVQPQEVDMDLVMV
VDSSREMQADEYAGMQQLLGSVVEQLVVSPQPRRVDHQARVAVVQQSGTRAPKVEFGFQT
YQDHNMMRRHLIQNMRQQGGSSALGQTLEFTLREVLMKASQPRRRRVMMVVVGTETAYTD
RVILKYISQKAKCEGVALFVVAVGDRYIRTEVEELASPPVQQHLIHVGRLKADEQGYAQR
FFRVFLSALNKGMNTYPPPSIKPTCGQLAPLGGGQVFSEGQGSAEPDEWVADEPEQRLQT
RGGESQTRLIHGLTRGQSPVLGHYINGSNILHKTQQLTSSVSKDVCSLRHEAGGCRNYTL
MWFFNSSRQRCSPFWYSGCGGNENRFKTQRECETVCVTPGGREDVISRKNKIG
NT seq
7542 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctcccaaaatgaagggaagcacaggtcttctcttcagcctcatcctagcagcg
tgttcctgtggcatcgctgctcagacaacagtttgtgaaaatgtcactgcagccgacatc
gtcttcctggtcgatggttcctccagcatttcacctcaaagctttgaggatatccaaaga
tttctccacagcgtcatcatggctcttgacattggccccaaaaaagttcagatcggcttg
gcacagtacagtgatgactttcatcaagagttcctcctgaaagatcacaaggacaggaag
tcattgttggatgcagtggaaaaattgtccctccgaggagggataacaaacacgggcaag
gccatcgacctcctccagaaacggtacttcaccccagcagcagggagcagagccaaccat
cggattcctcagattgctgtggtcatcacagatggagtgtccaatgatgacgtgattgca
cctgcccagagactgagggataagggagtcattgtgtttgccataggggtgggagaagca
aacgtaccagagctcgagtccatcgccgtcctctccccaaaggattttgttttcaccatt
gataattaccaggctctggccaggctgagggagactctgctgtcaactgtttgcaagtct
gtggaggctttggcggacaagtatgcagatattttcttcttggtggacagtggcatagcc
caaggaccgttctccatgtttaagtcagagcttaccaaattgatcaaacagattcctgtt
ggagcatccagttaccgcattggtttggctcagtatgctcaagataccaaggttgcattc
ttactcaactcttttcaaaccaagcaggagacgaccaacggtgtacaatctttccgcctg
cagccacaaccctacgaacgacataacctggccagagctctggagtacgccaatactcac
tttttcaccaaggaggcagggggtcgtgcacaccggggctccaaacagttcctggtcgtt
gtgactggaaaagactcagttggtcctgtggacagggaagctcattatatcaaattagca
gggatacgtattctggggatgaatgcaggtgcagacatgagattagtaaacgttctttcc
agtgcaggttatgcatttgatgctcccagaataactcttctgagagacattatcacttct
gtgaaaaaggagaacataactgaagattgcaaagaagccaatgtggcagacattgtgttc
atcgtagatgaatcggggagcattggacacgacaacttccatttggtacgtcatttcctg
aactcgatcgtgagtagcctggatgtcagtttgaatagagttcgaattggcttggttacg
tacggcgacagccccacagcccacatctacctcgatacgaaaagaggcaaggccgacatc
ctgcagtacatcagcgtcctgccttacagaggtggtggtacaaacactggagctgcccta
aactttgcacgggaaaaaatcttcattaaatcaaggggcaaaaggaaaggaagtgtccag
caggtggcagtggtgatcacagatggtttatctcaggatagtgtgagcgatgctgcaatc
aaacttcgtcgggatggtgtcaccatttactctgtaggaatcaaagttgacgataaatca
gagctggaggcgatggcgtctcaccccagccataaatatgtttttaacgtagatagtttc
accgacctgaaacgcctgaagcaagacctgcagaaagtcctgtgcagcaacatcattcaa
gaagtgttcactgaaagcacagacaaaaaagacatcaaacaagcgtgtgaacaaaaggat
gatgcagatatcttcttcctgatggatgactcaggaagcattggtaatgaagacttcaaa
gacatgcagaaattcatcattgggtttattaaggccttccatattggggaaaaccatgtc
cgcatagggcttgtgaaatactccaaaaatccaactgtggtatttgagccgacaacctat
tcagatggtaaaacgatcgagaaagccgtagagaatattttgcatgaaggaggtgggaca
aacacaggacaagcactggaatacatgaaacaagaaattgagaaagcaaagaacacgcgt
ggttacaaagtcccacagtatctgatcgtcatcacagatggaaaatcacaggatgaagtc
aaggctcctgcaaaagatttgagagaccaaggtctcaccatctttgctgtcggagtgaaa
gaatctgaccagaagcagttggttgaaattgccggcgacagtgagaatactttttttgtc
agtagttttgatgccctgacgcacctcaaagatgacatcatcagaaccatctgttctcca
gacgcttgtaaagacataccactcgacatcatgttcttagttgacagctcttggagtatc
tctgatgaggactacctgaaaatgaaagatttcataaaatctatcattaaaaagtctgcc
atcgggcagaatcaggtgcatgttggtgtcatgcagtacagcactgatccacaattggag
tttaaacttgacagacactacagcaaagataaactgttgaacgtcatcgatgctatgcag
cacatcaaacaaaacacccagacaggaaaggccatcacagaggtgtcgcggtattttact
aattcccagggagggcgtcctggcctggggcagagactggtaattataacagatggtgaa
tcccaagatgatgtcaaaggccctgctgcaactcttagagacagcggagtggagatctat
gccattggagtgggggaggctaaatacccccagctggtagagcttggcggttcagtggaa
aacagcttttatctgagcaggtttgatgctctgaaggaattggaaaaccacctgattttg
aagctctgttatgacgactgtaagaagactcaaagagctgacattattttccttgtggat
ggctccggaagcatacgacaacccgagtttacaagcatgcaaatatttatgaagtcaata
gtggacagaaccacagtcggcaaggaccagactaattttggggtcatcatctacgccaat
gaaccacattctgtttttagtcttgaagagcattcttcttccaaaaaagacgttcttgat
gcaattacaaaggtgagacaaccagagggattgacctacacaagcaaagccttgaaatac
tccttacagtactttggcgctgaacatggtggccgaagaaaaaaaaaggtgcctcagatt
ctcatggtgatcacagacggtgctgccaccgactctgatgctctggagttgtcatcaaat
gaactgcgaacaaacaacatccaagtcttcagcatcggaatcagggacgcatccatggaa
cagctgtataccatggctggtaacgacaaatccaaagtcttctatgtggacaattttgac
gccctggaaatgcttcacaagaatatttcttctgttctctgcaataccactaagccagct
tgtgagaaagacaaggcagatgtggtctttctacttgatcaatcaagtagcatcggcgat
gctaattacagtatcatgataaacttcgtggaacaacttgtggagagctttgacgtcagg
gaagaggatatacgtgttggagttgctcagttcagtgatatatttcaggatgagtttcac
ctcaacaagtattccaataaggaggacgtgatcgcacacatgaagaaaatgaaatacagt
ggtggagaaaccttaattggaaaggctttgcatcacattaaggggtacttcgagcagtca
aatggtagccgtaggtttgctaggatcccacagaatctggtgttgatcacagatggtgaa
tctcaagatgatgtggaggaggaggctgatattctcagggctatgaacatagagatgttc
gccattggtgtgggagacgtccatgacctggagctcctgcagatcactggcaccccagag
aggctgttcaatgtgcagaacttcaagagcttggtaaagatcaagcaaaagttgattgac
gaattctgtaaagaaccagaggagcaatctgcaccatgctccattgatatcgccattgga
tttgatattaccgaaaggaacagggcacttggtgagatgctggtcagcggtcaccccaag
ttaaagaccttcctgccagagatcacctctgatcttgcctcagtacaaggcctgtgctgt
gttaagcctgaccaacctgtggaaaccaaaattgcctactatgtcttcgatcgtaatgga
cgcactttgtatgatacaaactttgaacactacagtgaggatgtggtgcagaaagtcatg
agccatccagtgtcggaatctaccttcttcaacaccgccctactaaatgccttcaaggac
atgttccaagccaagtccaaagctaatgtgaaggtgctggtgatcttctcagacggactc
aatgaagacgtgatgaaactgaaacaagaatcagagcggctgcaacattctggggtcagc
gctctgctgattgtggctctggagagagtgaatgaccccacccagctgcaggaggtggag
tttggccgcgggtttaccgaccgccgtcctctgcgcatcggcatgccaaatgtgggcagc
accgtcctcaaattgattaacacagtgtcagacagggtgtgctgcaacgtcacctgtaaa
tgtgtaggacctccaggtccccgcggtcttccaggaacaccatcgtcaaagggtgaaact
ggacagaagggtcagccaggcttcccgggagaagagggagtcagtggcgagcgagggcct
ccaggacctcctggacctccgggcctgcagggctgtcctggagtcagtggactgaagggc
tcccgaggcatctcaggcaacaggggggacaacggagaagagggactggacggagtcgac
ggagagcagggatctacgggaacagacggacttaaaggacagagaggaaacgcaggaaac
ccaggtatcccgggtatcagagggcagcctggactgaaaggagatcgaggactgagagga
gatccgggtgaaccgggtaatgacaacaatgtcccaggacccaaaggacaccggggcaac
ccaggtttaccgggtacacctggaccagatgggcggccaggtgaggggggggtcattgga
aacccgggtccagatgggagaagaggtcttcctggagtgaagggtgcacctggagagcca
ggactcagtggactcccgggaagcccaggtgctgctggtacacagggacgccgagggccc
gacggtggcccagggccgaaaggaatctctggatttcctggacctcagggtaaacatgga
ggacccggagaaccaggaacacctggacgtcacggcccaaatggtcagaagggtcaaccg
ggagatccgggcgtgaagggctctccagggccacggggacccagaggacagccgggtcag
gatggtagagatggttatggacctccaggaaccaaaggtgccaagggagatcctggtttt
cctggataccctggtttactgggtgaagatggtctgaatggaaccaaaggttatccagga
aaaaaagggaacgacggtcgggacgggaactccggcacaccaggaggaccaggcgatcct
ggaggcctgggtcctaaaggacacatgggtccccgaggtcctcctggaaacagtagccat
actgagtgtcagctggtcaacttaatcagagacaactgtgcttgttgttctgatcgatca
gagtgtccagtcttccccacagagctggtgtttgctctggacatgtctgaagaggtgagc
gaaactgccttcgagaagcagcgcagtgctctcctctctctgctgaagggcatcatcatc
tcccagagcaactgtccaagaggtgcccgggttgcagtggtgggatacagcacccacacc
aagtacctgatccgcttccaagactacagccatataaatcaattgaccgagtctgtgaag
aaaatcacccggggacgcacaggtgaccggcaccagctgggggccgccatgcgctttgtg
ggtcagaacgtgttcaaacgtgtccgagcaggaaggatgatgaggaaggtggcagtattt
ttcactggtgggccatcccatgatgttaaagacattgttaccgccatgatggagtacaga
gcttctaacattttaccagcagtcatctctctgcaaaatgctccaggcattcttcgagcc
atggaggttgatgactcgagacacttcatcttcaaagtgctgggggaaaacatggatatt
gacttaagggatgtcaagcaatgtgcaatctgttacgacccctgcaagtattcagagcga
tgctccttcctccagaagccagtgcagcctcaggaggtggatatggacctggtcatggtg
gtggacagctccagggagatgcaggctgatgagtacgctggcatgcagcagctgctgggc
tctgtggtggagcagctggtcgttagcccccagccccgccgagtcgaccaccaggcccgg
gtggctgtcgtccagcagagcggcacccgggctcccaaggtggagtttggattccagacc
taccaggaccacaacatgatgaggagacacctgatccagaacatgcggcagcagggcggc
tcctcggctctgggacagacgctggagttcaccctgagggaggtgctcatgaaggccagc
cagccccgcaggaggagggtgatgatggtcgtcgtgggcacagagacggcttacaccgac
cgggtcatcctgaagtacatctcccagaaggccaagtgtgagggggtggcgctgtttgtg
gtggcggtgggcgatcgatacatccggacggaggtggaggagctggccagtccgcctgtc
cagcagcacctgatccacgtgggcagactgaaggccgacgagcagggctacgcccagcgc
ttcttcagagtcttcctctctgccctcaacaagggaatgaacacatatcctcctccatca
ataaaaccgacctgcggtcagctggcccctctggggggaggacaagtcttctcagagggt
caggggtcggcagagcctgatgagtgggtggcagacgagccggagcaaaggcttcagaca
cgaggaggagagagtcagaccagactcatccacggtttgacgagaggccagagtccagtc
ttaggacactacatcaatggttcaaacatcctgcacaagacacagcagctgaccagctca
gtctccaaagatgtttgttcactcagacacgaggcgggcggctgcaggaactacaccctg
atgtggttcttcaacagcagccggcagcggtgttcccccttctggtacagcggctgcggc
ggcaatgagaaccgcttcaagacgcagagggagtgcgagaccgtctgtgtgactccagga
ggaagagaagatgtcatcagccgcaagaacaagattggctga
DBGET
integrated database retrieval system
