KEGG   Streptomyces lydicus 103: SL103_13055Help
Entry
SL103_13055       CDS       T04699                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
slc  Streptomyces lydicus 103
Pathway
slc03030  DNA replication
slc03410  Base excision repair
slc03420  Nucleotide excision repair
slc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:slc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SL103_13055
   03410 Base excision repair
    SL103_13055
   03420 Nucleotide excision repair
    SL103_13055
   03430 Mismatch repair
    SL103_13055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:slc03032]
    SL103_13055
   03400 DNA repair and recombination proteins [BR:slc03400]
    SL103_13055
Enzymes [BR:slc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SL103_13055
    6.5.1.6  DNA ligase (ATP or NAD+)
     SL103_13055
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SL103_13055
DNA replication proteins [BR:slc03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SL103_13055
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SL103_13055
DNA repair and recombination proteins [BR:slc03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SL103_13055
   NER (nucleotide excision repair)
    Other NER factors
     SL103_13055
   MMR (mismatch exicision repair)
    Other MMR factors
     SL103_13055
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase PNKP_ligase
Motif
Other DBs
NCBI-ProteinID: AOP47057
UniProt: A0A1D7VJZ7
LinkDB All DBs
Position
3038707..3040266
Genome map
AA seq 519 aa AA seqDB search
MLLAELAEVSARVAATSARSRKTALLAGLFRDAAPEDAPVVIPYLAGRLPQGRIGVGWSV
LREPVPPARDPTLTVRDVDAALTGLARVSGAGAQGERRRLVRALLAAATAEEQRFLIGLL
TGEVRQGALDALAVEGLAEATGAPAADVRRAVMLAGALQDVARALLAEGPAALAAFRLTV
GRPVGPMLAHSAASVAEAVDKLGACAVEEKLDGIRVQVHRDGPEVHIHTRTLEEVTDRLP
EVTAAARALPAARFILDGEVIALDAEGRPVPFQRVAGRFGSRVDVAAAQAALPLSPVFFD
VLSVDGRDLLELPTAQRHTELARLVPEPQRVRRLVVEDASDAGARAAAEEFWARTLRRGH
EGVVVKALDAPYSAGRRGAAWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARGPDG
GFVMLGKTFKGLTDVTLDWQTERFRQLAVADDDHVVTVRPELVVEIAYDGLQTSSRYPAG
VTLRFARVVRYREDKTAAEADTVESVLAAHPGRERTDGG
NT seq 1560 nt NT seq  +upstreamnt  +downstreamnt
atgctgctcgccgaactggcagaggtgtcggcacgggtcgccgcgacctcggcgcgctcg
cggaagaccgcgctgctcgccgggctgttccgggacgccgcacccgaggacgcgccggtg
gtcatcccgtacctcgccgggcggcttccccagggccggatcggcgtcggctggagcgtg
ctgcgcgagccggtgccgccggcccgggaccccacgctgaccgtccgcgacgtcgacgcc
gcgctgaccggcctggcccgggtctccggcgccggggcgcagggcgagcggcgccggctg
gtgcgcgcactgctggccgcggcgaccgccgaggaacagcggttcctgatcgggctgctc
accggcgaggtgcggcagggcgcgctggacgccctcgccgtcgaagggctcgccgaggcg
accggggccccggccgccgacgtacggcgggcggtgatgctggcgggcgcactgcaggac
gtcgcgcgggcactgctcgccgaggggccggcggcgctcgccgcgttccggctgaccgtc
ggccggccggtcgggccgatgctggcgcacagtgccgcgtcggtcgccgaggcggtcgac
aagctcggcgcctgcgccgtcgaggagaagctcgacggcatccgcgtccaggtgcaccgg
gacgggccggaggtccacatccacacccgcacgctggaggaggtcaccgaccgcctcccc
gaggtcaccgccgccgcccgcgcgctgcccgccgcacgcttcatcctggacggcgaggtg
atcgccctggacgccgagggccggccggtgcccttccagcgcgtcgccggccgcttcggc
tcgcgggtcgacgtcgccgccgcgcaggccgcgctgccgctctccccggtcttcttcgac
gtcctgtccgtcgacggccgcgacctgctggaactgcccaccgcacagcggcacacggaa
ctggcgcggctggtccccgagccgcagcgggtacgccgcctggtcgtcgaggacgcctcc
gacgccggggcccgcgccgccgccgaggagttctgggcccgcaccctgcgccggggccac
gagggcgtggtggtcaaggcgctggacgccccctacagcgccggccgccggggcgccgcc
tggctgaaggtgaaacccgtgcacacgctcgacctggtggtgctcgccgcggagtggggc
cacgggcggcgcaccgggaagctgtccaacctccacctcggcgcgcgcggaccggacggc
ggcttcgtcatgctgggcaagaccttcaagggcctcaccgacgtcaccctggactggcag
accgaacggttccggcagctcgcggtggccgacgacgaccatgtcgtgacggtgcgtccg
gaactcgtcgtggagatcgcctacgacggactgcagacctcctcgcgctacccggccggg
gtgaccctccgcttcgcccgggtggtgcgctaccgggaggacaagacggcggcggaggcg
gacaccgtggagagcgtgctcgccgcgcaccccgggagagagcggaccgatggcgggtag

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