Streptomyces lydicus 103: SL103_27430
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Entry
SL103_27430 CDS
T04699
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
slc
Streptomyces lydicus 103
Pathway
slc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SL103_27430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slc03019
]
SL103_27430
03016 Transfer RNA biogenesis [BR:
slc03016
]
SL103_27430
Enzymes [BR:
slc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SL103_27430
Messenger RNA biogenesis [BR:
slc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SL103_27430
Transfer RNA biogenesis [BR:
slc03016
]
Prokaryotic type
tRNA degradation factors
SL103_27430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
DUF2017
KH_2
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
AOP49475
UniProt:
A0A1D7VRT4
LinkDB
All DBs
Position
complement(6339342..6341564)
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AA seq
740 aa
AA seq
DB search
MENETHYAEAVIDNGSFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQ
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQI
VETVMALNPDHLYDVVAINAASCSTQLAGLPFSGPIGGTRVALIKGQWVGFPTHTELEDA
VFDMVVAGRVLPDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKVLC
KAQADLAAKAAKPVGEFPTFLDHEDDVLEALTKAVKDELSQALTIAGKQEREAELDRVKG
LAAEKLLPDFEGREKEISAAYRTLTKKLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSP
KRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEIDGETHYVALTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMNEAIDVPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGSKVQVEIAEIDQRGKLSL
IPVIEEEDAAEADKKDDADK
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaagccgtgatcgacaacggttccttcggcacccgc
accatccgcttcgagacgggccgcctggccaagcaggccgccggctccgccgtcgcgtac
ctggacgacgacaccatggtgctgtcggccaccaccgcctccaagaacccgaaggaccag
ctggacttcttcccgctgaccgtcgacgtcgaggagcggatgtacgcagccggaaagatc
cccggctccttcttccgccgtgagggccgtccctccgaggacgccatcctcacctgccgt
ctcatcgaccgcccgctgcgcccgtccttcaagaagggcctgcgcaacgagatccagatc
gtcgagacggtcatggcgctcaaccccgaccacctctacgacgtggtcgccatcaacgcc
gcctcctgctccacgcagctcgccggcctgcccttctcgggccccatcggcggtacccgc
gtcgccctgatcaagggccagtgggtcgggttcccgacgcacaccgagctcgaggacgcg
gtcttcgacatggtcgtggccggccgcgtgctccccgacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagaagaccatccagctcgtcaaggacggcgcggaggccccg
accgaggaggtcgtcgccgccggtctcgaggccgcgaagccgttcatcaaggtcctgtgc
aaggctcaggccgacctcgccgccaaggccgccaagccggtcggtgagttcccgaccttc
ctcgaccacgaggacgacgtcctggaggccctgaccaaggccgtcaaggacgagctctcc
caggcgctgaccatcgccggcaagcaggagcgcgaggccgagctggaccgcgtcaagggc
ctggccgccgagaagctgctgccggacttcgagggccgcgagaaggagatctccgccgcg
taccgcacgctgaccaagaagctggtccgcgagcgcgtcatcaaggagaagaagcgcatc
gacggccgcggcgtcacggacatccgtacgctcgccgccgaggtcgaggcgatcccgcgg
gtgcacggctccgccctgttcgagcgtggcgagacccagatcctgggcgtcaccaccctc
aacatgctccgcatggagcagcagctggacaccctctccccggtgacccgcaagcgctac
atgcacaactacaacttcccgccgtactccgtcggtgagaccggccgcgtgggctcgccc
aagcgccgcgagatcggccacggtgcgctcgccgagcgcgccatcgtgccggtgctgccg
acgcgcgaggagttcccgtacgcgatccgtcaggtctccgaggcgctgggctccaacggc
tcgacgtccatgggctcggtctgcgcctcgaccatgtcgctgctgaacgccggtgtgccc
ctcaaggccccggtcgccggtatcgccatgggcctgatctcccaggagatcgacggcgag
acccactacgtcgccctcaccgacatcctcggcgcggaggacgccttcggtgacatggac
ttcaaggtcgccggcacgaagaccttcgtgaccgccctccagctggacaccaagctggac
ggcatcccggcctccgtcctggccgcggccctcaagcaggcccgcgacgcgcgtctgcac
atcctcgacgtgatgaacgaggcgatcgacgttccggacgagatgtccccgaacgcgccg
cggatcatcaccgtcaagatcccggtggacaagatcggtgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgacatcacgatcgaggacgacggc
accatctacatcggtgccgccgacggcccggccgccgaggccgcccgcgccacgatcaac
ggcatcgccaacccgaccatgccggaggtcggcgagcgctacctgggcacggtcgtcaag
accaccaccttcggtgcgttcgtctcgctgctcccgggcaaggacggcctgctgcacatc
tcgcagatccgcaagctcgccggcggcaagcgcgtggagaacgtcgaggacgtgctcggc
gtgggcagcaaggtccaggtcgagatcgccgagatcgaccagcgcggcaagctctccctg
atccccgtgatcgaggaagaggacgcggccgaggccgacaagaaggacgacgccgacaag
tga
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