KEGG   Streptomyces lydicus A02: T261_6975Help
Entry
T261_6975         CDS       T03756                                 

Definition
(GenBank) putative DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sld  Streptomyces lydicus A02
Pathway
sld03030  DNA replication
sld03410  Base excision repair
sld03420  Nucleotide excision repair
sld03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sld00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    T261_6975
   03410 Base excision repair
    T261_6975
   03420 Nucleotide excision repair
    T261_6975
   03430 Mismatch repair
    T261_6975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sld03032]
    T261_6975
   03400 DNA repair and recombination proteins [BR:sld03400]
    T261_6975
Enzymes [BR:sld01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     T261_6975
    6.5.1.6  DNA ligase (ATP or NAD+)
     T261_6975
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     T261_6975
DNA replication proteins [BR:sld03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    T261_6975
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     T261_6975
DNA repair and recombination proteins [BR:sld03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     T261_6975
   NER (nucleotide excision repair)
    Other NER factors
     T261_6975
   MMR (mismatch exicision repair)
    Other MMR factors
     T261_6975
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase PNKP_ligase DUF4777
Motif
Other DBs
NCBI-ProteinID: AJT68577
UniProt: A0A0D4DYE6
LinkDB All DBs
Position
7494659..7496200
Genome map
AA seq 513 aa AA seqDB search
MLLAVLAQVSADVAATSARTRKVALLAGLFRAAEPQDVPVVIPYLAGRLPQGRIGVGWSV
LREPVPAAERATLTVREVDAALTGLARVAGAGAQRERRRLVRELLAAATGQEQRFLYGLL
TGEVRQGALDALAVEGLAAATEVPTGDVRRAVMLAGSLPDVARALLADGPAALADFRLTV
GRPVGPMLAQSAASVAEALDRLGPCAVEQKLDGIRVQVHRDGDDVRIYTRTLDEVTDRLP
EVGAVARSLSAARFILDGEVIALDDVGRPMSFQRIAGRFGSRVDVGAARAALPLSPVFFD
VLALGDRDLLPLPAGDRAAELARLVPEEVRVRRQVVSDPADAAARAAAEDFWARTLRDGH
EGVVVKALDAPYSAGRRGAAWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARGPEG
GFVMLGKTFKGLTDATLTWQTERLQELAVAEHGYVVTVRPELVVEVAYDGLQTSTRYPAG
VTLRFARVVRYRDDKTAAEADTVETVLAQGRRP
NT seq 1542 nt NT seq  +upstreamnt  +downstreamnt
atgctcctcgccgtcctggcccaggtctccgcggacgtcgccgccacctcggcgcgtacc
cggaaggtcgcgctgctggcggggctgttccgggccgccgagccgcaggacgtgccggtt
gtcatcccgtacctggccgggcggctgccgcaggggcggatcggggtcggctggagcgtg
ctgcgcgagcccgtgccggcggcggagcgggcgacgctcaccgtgcgcgaggtggacgcg
gcgctgaccggcctggcccgggtggccggtgccggggcgcagcgggagcgccggcggctg
gtccgggagctgctggccgcggcgaccgggcaggagcagcggtttctgtacgggctgctg
accggggaggtacggcagggggcgctggacgccctcgcggtcgaggggctcgcggcggcg
acggaggtgcccacgggcgacgtacggcgggccgtgatgctggccggttcgctgccggac
gtcgcgcgggcgctgctcgccgacggacccgcggcgctcgcggatttccggctcacggtc
ggccgcccggtcggcccgatgctcgcgcagagcgccgcatcggtggccgaggcgctcgac
cggctcggcccgtgcgccgtggagcagaagctcgacggcatccgggtgcaggtccaccgg
gacggcgacgacgtacggatctacacccgcaccctggacgaggtcaccgaccgcctgccc
gaggtcggcgccgtcgcgcgcagcctgtccgccgcgcgcttcattctggacggcgaggtg
atcgccctggacgacgtgggacgtccgatgtccttccagcgcatcgcggggcgcttcggc
tcgcgggtggacgtcggcgccgcacgggccgcgctgccgctgtcaccggtcttcttcgat
gtgctcgcgctcggcgaccgtgacctgctgccactgcccgccggtgaccgggccgcggag
ctggcgcggctggtccccgaggaggtacgggtgcgccgccaggtggtgtccgacccggcc
gacgccgcggcccgcgccgccgccgaggacttctgggcccggaccctgcgcgacggccac
gagggcgtcgtcgtcaaggccctcgacgccccgtacagcgcgggacgccggggcgccgca
tggctgaaggtcaaaccggtgcacacactcgacctggtggttctggccgcggaatggggc
cacggccggcgcaccggcaagctctccaacctccacctcggcgcgcgcggcccggaaggc
gggttcgtcatgctcggcaagacgttcaagggactcaccgacgccaccctcacctggcag
accgaacgcctccaggagctggcggtggcggagcacgggtacgtcgtcaccgtacggccg
gagctcgtcgtcgaggtcgcgtacgacggccttcagacgtccacccgctatccggcgggg
gtgacgctccgcttcgcccgcgtcgtgcgctaccgggacgacaagacggcggcggaggcg
gacaccgtggagacggtgctcgcacaagggcggcggccatga

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