Spirosoma linguale: Slin_5873
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Entry
Slin_5873 CDS
T01156
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sli
Spirosoma linguale
Pathway
sli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slin_5873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sli03019
]
Slin_5873
03016 Transfer RNA biogenesis [BR:
sli03016
]
Slin_5873
Enzymes [BR:
sli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Slin_5873
Messenger RNA biogenesis [BR:
sli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Slin_5873
Transfer RNA biogenesis [BR:
sli03016
]
Prokaryotic type
tRNA degradation factors
Slin_5873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Rrp44_S1
OB_Dis3
Casc1_C
Motif
Other DBs
NCBI-GeneID:
8729649
NCBI-ProteinID:
ADB41837
UniProt:
D2QSQ5
LinkDB
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Position
complement(7114839..7117316)
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AA seq
825 aa
AA seq
DB search
MRNGKSKQTKYTKDAASQPAGRQSHTARPREKGVERSGKSHVRPIQQADSFLDEMKNDIM
AFFQINDEQSFTQEQVLDHFDTSDRRMKLIMHGLIGELTDEGTIVRQPDGTYRADADANV
VEGVVDHVNSRFAFVIPDTAAGTARDRDDDIWVSTDDLAGAVDGDRVRVVRFQDSRNGGR
NAARRRIEGKVASVVERGRTELVGRIEVWPTYGFVVPDSKKIYDDIFIPKEKLGGANDGE
KVIVRLTKFPDPNSSKQRFEGEVITVLGVAGQNNTEMHAILAEFGLPIHFPADVEKEAEA
IPTKILKKDLAKRRDMRDVTTFTIDPIDAKDFDDALSVQILDNGNFEIGIHIADVTHYVL
PGSKLEEEAFKRATSVYLVDRVVPMLPEKLSNGLCSLRPNEDKLTFSAVFEMTSDAKIVN
EWFGRTAIHSNRRFAYEEAQDILNSNSGDYIEELRLLNELAYKLRDERFKNGAINFETVE
VRFRLDENGVPLAVYPKIRQDTNKLIEEFMLLANKRVAEFVHSLSKRNKGGEENTMVYRV
HESPAEDKLRSFSDFARKLGYKLNVDDEHLSNSMNRFMASIEGKPEANMLQQLAVRTMSK
ARYSTEDLGHFGLAFKRYSHFTSPIRRYPDMMAHRLLQHYLDKGKPADRDEYEEKCRHSS
EREKMASDAERASIKYKQVEFMSRMAPDQVFEGVISGVTEFGIFVEITENSCEGLVRMQD
LSDDFYEFDKDNYRIIGSRTKKMYTFGDAVVVRVKETNLARRSMDFALVSDKAGRATDAG
SGRKSGRSDSSRLGGSSSTRKVGGSRGKESVAAKGENRRGGRGRR
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacggaaaatcgaaacaaactaaatatacaaaggatgctgccagccaaccggcc
ggcaggcaatcccacacagcacgcccacgcgaaaaaggggtggaacgatccggcaaaagc
cacgttcgccccattcagcaggcagactcctttctggatgagatgaagaacgacattatg
gcgttttttcagattaacgacgaacaatcgtttacccaagagcaggttcttgaccatttc
gacaccagcgaccgacgcatgaaactcatcatgcacggcctgatcggcgaactaaccgac
gaaggtactattgtacgccagcccgacggcacttaccgcgccgatgccgacgccaacgtt
gttgaaggcgtggtcgaccatgttaactcacgctttgcttttgttattcccgatacagcc
gctggcaccgcccgcgaccgcgacgacgacatctgggtatcgacggacgatctggccgga
gccgtcgatggagaccgcgtacgcgtggtacgttttcaggattcgcgcaacggtggccgc
aatgccgcccgacgccggattgaaggcaaagtggccagcgtagtagagcggggccgtaca
gaactggtgggccgcattgaagtctggccaacctacggttttgtggtgcccgacagcaag
aaaatatacgatgacattttcatcccgaaagagaaactcgggggtgccaacgacggcgaa
aaagttattgttcgcctgacgaaatttcccgaccccaacagcagcaaacagcggtttgag
ggtgaggtgataacggtactgggtgtggctggtcagaacaacaccgaaatgcacgctatt
ctggcagagttcggtttgccgattcacttccccgccgatgtggagaaagaggccgaagcc
atcccgactaaaattctgaaaaaggatttggccaaacggcgcgacatgcgcgatgtgacg
accttcaccatcgacccaattgacgccaaggattttgacgatgccctgtcggtacaaata
ctcgacaacggcaattttgaaattggtattcacattgccgatgtcacccactacgtgctg
cccggctcgaaactggaagaagaagcgttcaagcgggccacctcggtttacctcgtagat
cgggtagtgcctatgcttcccgaaaaattgtcgaacggcctgtgttcactccggcccaat
gaagacaagctgactttctcggctgttttcgaaatgacgtccgatgccaaaatcgtgaac
gaatggtttggccggacggctattcactccaaccgccggttcgcctacgaagaagcgcag
gatatcctgaacagcaacagtggtgactacattgaggaactacgcctgctgaacgagttg
gcgtataaactccgcgacgaacgcttcaagaacggagccatcaatttcgaaacggttgaa
gtgcgcttccggctcgacgagaatggcgttccactggccgtttacccgaaaattcggcag
gacaccaacaaactcatcgaagagtttatgttgctggctaacaaacgggtagccgagttt
gtccattccctctcgaagcgcaacaagggcggtgaagaaaacacaatggtttaccgggtg
cacgaatcgcccgccgaagataaactgcgtagtttttcggattttgcgcgtaaactgggc
tacaaactcaacgtcgacgacgagcacctgtccaactcgatgaaccgctttatggcgagc
atcgaaggcaaacccgaagccaacatgctccagcagctggccgttcggactatgtcgaag
gcgcgctacagcaccgaagaccttgggcacttcggactggcctttaaacggtattcgcac
ttcacctcgcccattcgtcgttaccccgatatgatggcgcaccgcttgttgcagcattac
ctggacaagggtaaacccgccgaccgtgacgaatacgaagagaagtgtcggcattcgtcg
gaacgggagaaaatggcttccgatgccgaacgtgccagcataaagtacaagcaggttgaa
tttatgagccggatggctcccgatcaggtatttgagggtgttatttcgggcgttacggag
ttcggcatcttcgttgaaatcaccgagaacagctgcgaaggcctggttcgtatgcaggat
ttgagcgacgatttctacgagttcgacaaagacaactaccgcatcattggcagccgcacc
aaaaagatgtacacgtttggtgatgccgtagtggtacgggtgaaagaaaccaacctcgcc
cgccgaagcatggacttcgcgcttgtcagcgataaagcaggtcgggctaccgatgcggga
tcgggccgtaagtcgggccgcagcgacagcagtcgtttgggcggttcgtcttctacccgc
aaagtaggcggcagccgtggcaaagaaagcgtagctgcgaaaggtgaaaaccgccgtggc
ggacgcggtcgccgatag
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