Sulfuricaulis limicola: SCL_2304
Help
Entry
SCL_2304 CDS
T05241
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
slim
Sulfuricaulis limicola
Pathway
slim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCL_2304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slim03021
]
SCL_2304
03400 DNA repair and recombination proteins [BR:
slim03400
]
SCL_2304
Enzymes [BR:
slim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCL_2304
Transcription machinery [BR:
slim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCL_2304
DNA repair and recombination proteins [BR:
slim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCL_2304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BAV34592
UniProt:
A0A1B4XIG9
LinkDB
All DBs
Position
complement(2349568..2353662)
Genome browser
AA seq
1364 aa
AA seq
DB search
MTYSFTEKKLIRKNFGKRPGVLKVPYLLEIQKESYRQYLQAETPPEQRIDQGLQAAFKTV
FPIESYNGNAALEFVSYRLGIPAFDVKECQQRGLIYAAPLRALLRLVVFEKDEATGTKTV
RDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFEHDYGKTHSSGKLLFSA
RVIPYRGSWLDFEFDPKDYLYVRIDRRRKLAATILLRAIGMSTQEILATFFETDSFHLVK
NEIRLDLIPNRLRGMQFEFDVKTPKGEVIIEANRRISGRHVRELEKSKLKQLTIEPSFLI
GRSLAEDVIHPQTGELLAQANDLVSKDLIDKLFEAGIGEVKTIYTNDLDQGSFISDTLRL
DPTRDALEAQIEIYRMMRPGEPPTRDAAQTLFNNLFFSPDRYDLSAVGRMKFNRRVGRGS
DEGPGILTKEDIVDAMKILIELKNGKGEIDDIDHLGNRRVRSVGELAENQFRVGLVRVER
AVKERLSLAESEGLMPQELINAKPVSAVIKEFFGSSQLSQFMDQTNPLSEITHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLETPYRK
VNNGKVADEVNYLSAIEESKFMIAQANATLDSRGHLIDELVSCRFKNEFMLSTPDKVEYI
DVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLQTEKPLVGTGIERIVAIDSG
ATVVAKRGGLVDSVDASRIVVRVNDDETKPGEVGVDIYNLTKYTRSNQNTNINQKPLVRV
GDIIASGDVLADGQSTDMGELALGRNILVAFMPWNGYNFEDSILISERVVENDYFTTIHI
EELQTVARDTKLGPEEITRDIPNVGETALAKLDESGIVYIGAEVDAGDILVGKVTPKGET
QLTPEEKLLRAIFGEKASDVKDTSLRVPSGISGTVIDVQVFTREGVEKDARAKSIEESEL
ASIRKDLDDQYRILENDAFARLERQLIGKVADGGPAGLKNGDKITKTYLDELSRNKWFDI
RLKNEEASQALEQIRGYLAKQKDLFDQKFTEKKVKLTSGDDLAPGVLKMVKVYVAVKRRL
QPGDKMAGRHGNKGVISRIVAVEDMPYTADGTPADIVLNPLGVPSRMNVGQVLETHLGWA
AHELGAQIGKMLEEQRKAEEIRRFIDRIYNHIGKSGRKEDIKSLTDDEILELARNLRKGV
PVATPVFDGAAEEEIKEMLVMAGLPPSGQTTLWDGRTGEAFDRPVTVGYMYMLKLNHLVD
DKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVMG
RTKMFENIVKGDHRMEPGMPESFNVLVKEIRALGIDMELELDKE
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgacctactcattcaccgagaagaaactcatccgcaagaactttggcaaacgccccggc
gttctgaaggttccctatctgctcgaaatccagaaggaatcctatcgccagtacctgcag
gcggaaacgccgccggagcagcggatcgaccagggtctgcaggccgccttcaagacggtg
tttccgatcgagagttacaacggcaacgcggcgctggaattcgtcagctatcgtctcggc
ataccggcgttcgacgtcaaggaatgccagcaacgcggcctgatctacgcggcgccgctg
cgcgcgctgctgcgcctggtggtgttcgagaaggacgaggccaccggcaccaagaccgtg
cgcgacatcaaggagcaggaagtgtacatgggtgaaatcccgctcatgaccgacaacggc
acgttcgtgatcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgttcgccgggc
gtgttcttcgagcacgattacggcaagacgcattcgtccggcaagctgctgttctcggca
cgcgtgattccctaccgcggctcgtggctcgatttcgagttcgaccccaaggattacctg
tacgtgcgcatcgaccgccgccgcaagctggcggccacgatcctgctgcgcgccatcggc
atgtcgacccaggaaatcctggcgacctttttcgagaccgacagcttccatctggtgaag
aacgaaatccggctcgacctgatccccaaccggctgcgcggcatgcagttcgagttcgac
gtgaagactccgaagggcgaggtcatcatcgaggccaaccggcgcatttccggacgtcat
gtgcgcgagctggagaagtccaagctcaagcaactgaccattgaaccgagcttcctcatc
ggccgctcgctggccgaggacgtgattcacccgcagaccggcgaactgctggcgcaggcc
aacgacctggtttccaaggacctgatcgacaagctgttcgaggccggcatcggcgaggtc
aagacgatctacaccaacgacctcgaccagggttcgttcatctccgacaccctgcgcctg
gacccgacgcgcgacgcgctcgaggcccagatcgaaatctatcgcatgatgcgccccggc
gagccgccgacgcgcgacgccgcccagacgctgttcaacaacctgttcttcagccccgac
cgctacgacctgtccgcggtcggccgcatgaaattcaaccgccgcgtcggtcgcggctcc
gacgaaggcccgggcattctgaccaaggaagacatcgtcgacgcgatgaaaatcctgatc
gagctcaagaacggcaagggcgagatcgacgacatcgaccatctcggcaaccgccgcgtg
cgttccgtgggcgagctggcggaaaaccagttccgcgtcggcctggtgcgcgtcgagcgc
gccgtgaaggagcgtctgtcgctggcggagtccgagggtctgatgccgcaggagctgatc
aacgccaagccggtgtcggcggtgatcaaggaattcttcggctccagccagctgtcgcag
ttcatggaccagaccaatccgctgtccgagatcacgcacaagcgccgcgtctcggccctc
ggacccggcggcctgacgcgcgaacgcgccggcttcgaggtgcgcgacgtacatccgacg
cattacggacgcgtgtgcccgatcgaaacgccggaaggcccgaacatcggcctgatcaac
tcgctcgcggtctatgcccgcaccaatgaatacggcttcctcgagacgccgtatcgcaag
gtcaacaacggcaaggtggcggacgaggtgaattacctctcggccatcgaagagagcaaa
ttcatgatcgcgcaggcgaacgccacgctcgacagccgcggtcacctgatcgacgagctg
gtgtcgtgccgcttcaagaacgagttcatgctgtccacgccggacaaggtggagtacatc
gacgtggcgccgtcgcagatcgtgtcggtggcggcctcgctgattccgttccttgagcac
gacgacgccaaccgcgccctcatgggttcgaacatgcagcgccaggccgtgccctgcctg
cagaccgaaaagccgctggtcggcaccggcatcgagcgcatcgtggcgatcgattcgggt
gccaccgtggtcgccaagcgcggcggcctggtggactccgtggacgcctcgcgcattgtg
gtgcgcgtcaacgacgacgaaaccaagccgggcgaggtcggtgtcgacatttacaacctg
accaaatacacgcgctcgaaccagaacaccaacatcaaccagaagccgctggtgcgggtg
ggcgacatcatcgccagcggcgacgtgctggccgacggccagagcaccgacatgggcgag
ctcgcgctgggacgcaacatcctggtcgcgttcatgccgtggaacggctacaacttcgag
gactcgatcctcatttccgagcgcgtggtggagaacgactatttcaccaccatccatatc
gaggaactgcagacggtggcgcgcgacaccaagctcggacccgaggagattacgcgcgac
atcccgaacgtgggcgaaaccgcgctggccaagctcgacgagtccggcatcgtctacatc
ggcgccgaggtcgacgccggcgacatcctggtcggcaaggtcacgcccaagggcgagacc
cagttgaccccggaagagaaactgctgcgcgcgatcttcggcgagaaggcctcggacgtg
aaggacacgagcctgcgcgtgccgtccggcatctccggcacggtcatcgacgtgcaggtg
ttcacgcgcgagggcgtggagaaggacgcgcgcgccaagagcatcgaggagtcggaactg
gccagcatccgcaaggatctcgacgaccagtaccgcatcctggaaaacgacgcgttcgcg
cgcctcgagcgccagctgatcggcaaggtcgccgacggtggccccgcgggcctgaagaac
ggcgacaagatcaccaagacctatctcgacgagctgtcgcgcaacaagtggttcgacatc
cgcctcaagaacgaggaggcctcgcaggccctggagcagatccgcggctacctggcgaag
cagaaggatctgttcgaccagaaattcaccgagaagaaggtcaagctcacctcgggcgac
gatctggcgccgggcgtgctcaagatggtcaaggtctatgtcgccgtgaagcgccgcctg
cagcccggcgacaagatggccggacgccacggcaacaagggcgtgatctcgcgcatcgtc
gcggtcgaggacatgccctacacggcggacggcaccccggcggacatcgtgctgaacccg
ctcggtgtgccctcgcgcatgaacgtgggccaggtactggaaacccatctcggctgggcg
gcgcatgagctgggcgcccagatcggcaagatgctggaagaacagcgcaaggccgaggaa
atccgccgcttcatcgaccggatctacaaccacatcggcaagagcgggcgcaaggaagac
atcaagtcgctgaccgacgacgagatcctcgagctcgcgcgcaacctgcgcaagggcgtg
ccggtggcgacgccggtgttcgacggcgcggcggaagaagagatcaaggaaatgctggtt
atggcgggcctgccgccctccggccagaccacgctgtgggacgggcgtaccggcgaggcc
ttcgaccgcccggtgacggtgggctacatgtacatgctcaagctcaaccacctggtggac
gacaagatgcacgcgcgctcgaccggtccgtactcgctggtcacgcagcagccgctcggc
ggcaaggcccagttcggcggccagcgcttcggcgaaatggaagtgtgggcgctcgaggcc
tatggcgcctcgtacacgctgcaggaaatgctcacggtcaagtccgacgacgtcatgggc
cgcaccaagatgttcgagaacatcgtcaagggcgaccatcgcatggaaccgggcatgccc
gaatccttcaacgtgctggtgaaggaaatccgcgcgctcggcatcgacatggagctggag
ctggacaaagagtag
DBGET
integrated database retrieval system
