Sulfuricaulis limicola: SCL_2745
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Entry
SCL_2745 CDS
T05241
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
3.6.4.13
]
Organism
slim
Sulfuricaulis limicola
Pathway
slim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCL_2745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slim03019
]
SCL_2745
Messenger RNA biogenesis [BR:
slim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCL_2745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAV35022
UniProt:
A0A1B4XJP1
LinkDB
All DBs
Position
complement(2788312..2789781)
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AA seq
489 aa
AA seq
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MSDHHLSDKSFAGLNLPEPLLRGVHEAGFEYCTPIQAEALPLALAGQDVAGQAQTGTGKT
AAFLLAAFNHLLAHPAEGRLPTQPRAIMLAPTRELAVQIHRDAEVLGKHTGFRLGLVFGG
TGYDSQRKMLEEGVDVLIGTPGRLIDYFKQHVFDLNAVQVMVLDEADRMFDLGFIKDIRF
LLRRMPPPARRLSMLFSATLSYRVTELAYEHMNNPQFVSIEPDKRTADKVTQVLYHTALE
EKLPLLVHLLRQKDPTRSLVFTNTKDMAEHIAATLKANGLDAAVLSGDVPQNLRLRILLD
FTEGRLPVLVATDVAARGLHIPDVSHVFNYDLPQNAEDYVHRIGRTARAGASGDAVSFAC
ERFVFGLPEIEAYIGHKIPTAPVLPEMQPSIERVARPPRHDRGDRRPGGDRGRGGRPERG
RGQERGREREARRPERERPREPEVRRQEAAPRTEQPVETPAPPAKPVPSAKRLVRPALRR
PGGEKPVIG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatcaccatctcagcgacaagtccttcgccggactgaacctgcccgagcccctg
ttgcgcggggtgcacgaggccggcttcgaatattgcacgccgatccaggccgaggcattg
ccgctggcgctggccggccaggacgtcgccggccaggcccagaccggcaccggcaagacc
gcggcgtttctgctggcggcgttcaaccatttattggcgcacccggccgagggccgcctc
ccgacccagccgcgtgccatcatgctggcgccgacgcgcgagctggcggtgcagattcac
cgggacgccgaggtgctgggcaagcacaccggcttccggctcggcctcgtgttcggcggt
accggctatgactcgcagcgcaagatgctggaagagggagtcgacgtgctgatcggcacg
cccggtcgtctcatcgattatttcaagcagcacgtgttcgatctcaacgcggtgcaggtc
atggtgctggacgaggccgaccgcatgttcgacctcggcttcatcaaggacatccgcttc
ctgttgcgacgcatgccgccgccggccaggcgcctcagcatgctgttctcggcgacgctc
tcgtaccgcgtcaccgaactcgcctacgagcatatgaacaacccgcagttcgtgagcatc
gagccggacaagcgcaccgccgacaaggtcacgcaggtgctgtatcacaccgccctcgag
gagaagctgccgctgctggtgcacctgctgcggcaaaaggacccgacccgcagcctggtg
ttcaccaacaccaaggacatggccgagcacatcgccgctacgctcaaggccaacggcctc
gacgccgcggtgctgtcgggcgacgtgccgcagaacctgcgcctgcgcatcctgctcgat
ttcaccgagggtcggctgccggtgctggtggcgaccgacgtggcggcgcgcgggctgcac
atcccggacgtgtcgcacgtgttcaattacgacctgccgcagaacgccgaggactacgtg
caccgcatcggccgtaccgcgcgcgccggcgccagcggcgacgccgtgagcttcgcctgc
gagcgctttgtgttcgggctgcccgagatcgaggcctacatcggccacaagatcccgacc
gcgccggtgctgccggagatgcagccgtccatcgagcgcgtggcgcggcccccgcgccac
gaccgtggcgatcgccgccccgggggcgatcgcggacgcggcggccgtcccgagcgcgga
cgcggccaggaacgtggccgcgagcgcgaggcgcggcggccggagcgtgaacgtccgcgc
gaaccggaggtccgacgtcaggaggccgcgccgcgtacggagcagcccgttgaaacaccg
gcgccaccggccaagccggtgccgagcgcgaagcggctggtgcggccggcactgcgccgc
cccggcggcgagaaaccggtcatcggttaa
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